>retro_hvul_8
ATGGCCGTGCCCACCAACGACTCCGCCGTGCGCGCGCGCCTCCGCCGTCTCGGCGAGCCCATCACGCTCTTCGGCGAGGG
CGCGATGGAGCGCCGCGACCGGCTACGCGCACTCATGGCCCGCCTCGAGGCCGAGGGCCAGTTCGACCGCCTCCTCCGCG
CGCAGGAGGACGAACAGGGAGCCCCGGGCGACGACGAGGAGGACACGGAGGAGCAGATCAAGTACCCGTTCTTCACCGAG
GGGACCAACCAACTGCTCCAGGCGCGCGTTGACATCGCCATGTACTCGCTGCCCCGCGCCAAGGCCAGGGTCGAGAGGGC
CAAGCGACGACTCGCCGACCCCGACGAGGACCCCGAGGCAGAGGCCGGACTTGTTGTGAAGCAGGCGGCGGACTTCGTGC
TTGAGTGCAGCGAGATTGGAGATGACCGCCCGCTCACCGGCTGCTCCTTCTCCCGCGACGCCTCGATGCTCGCCACAAGT
TCCTGGAGCGGAATCGTCAAAGTATGGAGCATGCCGCAGATAACCAAAATTGCAACCCTGAAAGGTCATACAGAACGCGC
AACTGATGTTGCCTTCTCTCCAGTCGATAACTGCTTAGCGACAGCCTCAGCTGATAGAACTGCCAAATTGTGGAACAGCC
ATGGGTCACTTCTAATGTCCTTTGATGGTCACCTGGATCGTCTTGCTCGCCTTGCTTTTCATCCATCTGGAAAGTACCTT
GGCACAGCTAGCTTTGACAAGACCTGGAGATTATGGGACATCAATACTGGAACTGAACTTCTACTCCAGGAGGGGCATAG
CAGAAGTGTATATGATCTTAGCTTTCACCCTGACGGTTCTTTAGCTGCATCTTGTGGGTTTGATGCGACTGCTCGAGTTT
GGGATCTCAGATCAGGAAGATTGTACTGTACCCTCATTGGACATGTGAAGCCTGTCCTAGGAGTCAGCTTCTCCCCTAAT
GGTCATCTGGTTGCAACCGCAAGTGAAGACAATTTCTGTCGAATATGGGATTTGAGGACCAGACAAATGATTTATTCTAT
ACCAGCACATAAGAGTCTTATCTCACATGTGAAATTTGAACCCCAGGAGGGTTATTATTTAGTGACATCTTCCTATGACA
CTAAAGCAGCGCTGTGGTCAACTCGGGATTACAGACCAATTAAAAGCTTGTCAGGCCATGAGTCAAATGTTTCTAGTCTG
GATATCAGTGGAGATGGACAACAGATTGTGACTGTTTCACACGATAGAACGATAAAGATTTGGTCATGCAGAGGCAGCGC
GCGGGATGATGAGATGGAGTTGGATTAA
ORF - retro_hvul_8 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
89.92 % |
Parental protein coverage: |
100. % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | MAVPTNDSAVRTRLRRLSEPITLFGEREMERRDRLRALMVRLEADAQFDRLLRAQEDEQGAPDDDDT--- |
| MAVPTNDSAVR.RLRRL.EPITLFGE..MERRDRLRALM.RLEA..QFDRLLRAQEDEQGAP.DD..... |
Retrocopy | MAVPTNDSAVRARLRRLGEPITLFGEGAMERRDRLRALMARLEAEGQFDRLLRAQEDEQGAPGDDEEDTE |
|
Parental | EQIQYPFFTEGTNQLLQARLDIAMYSLPRAKARVDRAKRRLADPDEDPEAEAGLVVKQAGDFVLECSEVG |
| EQI.YPFFTEGTNQLLQAR.DIAMYSLPRAKARV.RAKRRLADPDEDPEAEAGLVVKQA.DFVLECSE.G |
Retrocopy | EQIKYPFFTEGTNQLLQARVDIAMYSLPRAKARVERAKRRLADPDEDPEAEAGLVVKQAADFVLECSEIG |
|
Parental | DDRPLTGCSFSGDASMLATSSWSGIIKVWSMPQITKIATLKGHRERATDVAFSPVDNCLATASADKTAKL |
| DDRPLTGCSFS.DASMLATSSWSGI.KVWSMPQITKIATLKGH.ERATDVAFSPVDNCLATASAD.TAKL |
Retrocopy | DDRPLTGCSFSRDASMLATSSWSGIVKVWSMPQITKIATLKGHTERATDVAFSPVDNCLATASADRTAKL |
|
Parental | WNSDGSLLMSFDGHLDRLARVAFHPSGKYLGTASFDKTWRLWDINTGTELLLQEGHSRSVYGVSFHPDGS |
| WNS.GSLLMSFDGHLDRLAR.AFHPSGKYLGTASFDKTWRLWDINTGTELLLQEGHSRSVY..SFHPDGS |
Retrocopy | WNSHGSLLMSFDGHLDRLARLAFHPSGKYLGTASFDKTWRLWDINTGTELLLQEGHSRSVYDLSFHPDGS |
|
Parental | LAASCGLDANARVWDLRSGRLYCTLIGHVKPVLGVSFSPNGHLVATASEDNFCRIWDLRTRQMLYSIPAH |
| LAASCG.DA.ARVWDLRSGRLYCTLIGHVKPVLGVSFSPNGHLVATASEDNFCRIWDLRTRQM.YSIPAH |
Retrocopy | LAASCGFDATARVWDLRSGRLYCTLIGHVKPVLGVSFSPNGHLVATASEDNFCRIWDLRTRQMIYSIPAH |
|
Parental | KSLISYVKFEPQEGYYLATSSYDTKAAVCFICDFGSI |
| KSLIS.VKFEPQEGYYL.TSSYDTKAA.....D...I |
Retrocopy | KSLISHVKFEPQEGYYLVTSSYDTKAALWSTRDYRPI |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Hordeum vulgare was not studied using RNA-Seq expression data.
Hordeum vulgare was not studied using ChIP-Seq data.
Hordeum vulgare was not studied using EST data.
Hordeum vulgare was not studied using FANTOM5 data.
retro_hvul_8 was not experimentally validated.
Retrocopy orthology:
Hordeum vulgare does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
3 parental genes, and
3 retrocopies.