>retro_hvul_93
GAGATGGCGTCTTAGGTGGCGAAGGTTGTGGTGTCGGAGTCGATGCTCCACAAAAGGAAGACTGAGGATCTCTCGGCCAT
CGAGAAGAAGGAGAATGTCGTCGCCGAGAAGAAGCAGGCATGCGGGAACCACAAGGTCATCTTTGCCCGCGCCAAGTAGT
ATGCCGAGGAGTACGATGCCCAGAACAAGGAGTTGGTGCAGCTTAAGCGTGAGGCCCGGTTGAAGGGTGGGTTCTATGTC
AGTCCTGAGGCAAAGCTGTTGTTTGTTGTTCGTATCCGTGGTATCAATGCTATGCACCCGAAGACAAAAAAGATCTTGGA
ACTTTTGCGTTTGAGACATATCTTCAATGGCGTGTTCCTGAAGGTCAACAAGGCCACCAATAATAGGATACGCAGGGTTG
AACCATATGTTGCGTATGGTACCCTAACTTGAAGAGTGTCCGAGAGTTGATCTACAAGAGAGCTTATGGGAAGCCAAACA
AGCGT
ORF - retro_hvul_93 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
80.37 % |
Parental protein coverage: |
65.59 % |
Number of stop codons detected: |
2 |
Number of frameshifts detected |
1 |
Retrocopy - Parental Gene Alignment:
Parental | QMSSEAAKVVVPESVLLKRKREELWAAEKKTKAVEEKKKSTENRKVIFARAKQYAEEYDAQDKELVQLKR |
| .M.S..AKVVV.ES.L.KRK.E.L.A.EKK...V.EKK....N.KVIFARAK.YAEEYDAQ.KELVQLKR |
Retrocopy | EMAS*VAKVVVSESMLHKRKTEDLSAIEKKENVVAEKKQACGNHKVIFARAK*YAEEYDAQNKELVQLKR |
|
Parental | EARMKGGFYVSPEAKLLFVVRIRGINAMHPKTKKILQLLRLRQIFNGVFLKVNKATINMLRRVEPYVAYG |
| EAR.KGGFYVSPEAKLLFVVRIRGINAMHPKTKKIL.LLRLR.IFNGVFLKVNKAT.N..RRVEPYVAYG |
Retrocopy | EARLKGGFYVSPEAKLLFVVRIRGINAMHPKTKKILELLRLRHIFNGVFLKVNKATNNRIRRVEPYVAYG |
|
Parental | -YPNLKSVRELIYKRGYGKLNKQ |
| .YPNLKSVRELIYKR.YGK.NK. |
Retrocopy | <YPNLKSVRELIYKRAYGKPNKR |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Hordeum vulgare was not studied using RNA-Seq expression data.
Hordeum vulgare was not studied using ChIP-Seq data.
Hordeum vulgare was not studied using EST data.
Hordeum vulgare was not studied using FANTOM5 data.
retro_hvul_93 was not experimentally validated.
Retrocopy orthology:
Hordeum vulgare does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
1 parental gene, and
1 retrocopy.