>retro_hvul_96
GCCCACTGCGTGCACGTGCTAGCTATACTGATCGATCGTGTTTCCGCAGGGGAGGAGGAGATGGGGCGGCTCCGGCAGGC
GGTGGAGGGGCTGGAGGTGGGCGTGCTGGTGAACAACGCCGGCGTGGCGACGCCACACGCAACGTACCTCCACGAGGCCG
ACGCGGATGCGTGGGTGAAGATGATCCGGGTGAACCTGTGCGCCGTGACGGAGGTGACGGCGGCCGTTCTGCCCGGCATG
GTGGGGCGCGGGAGGGGCGCCGTCGTCAACATCGGCTCCGGCGCGGCGGAGGCGCTGCCCTCCTACCCGCTCTACTCCGT
CTACGCCGCTACCAAGCGCTACGTGTCTCACTTCTCCAGGAGCCTCTACGTCGAGTACAGCGGCAAAGGAATCGACGTGC
AGTGCCAGGCCCCGTTGTACGTGGACACGAAGATGGTGACCAACATGGTGACGCGGGGGGCAGGCCTCCTGTCGCGGCTG
ATCGTGCCGACGTCGGACGCGTACGCCGGCGCGGCGGCGCGCTGGATCGGGTTCCGCCGCCCGGTCTGCATGCCCAACCT
CGGCCACCGGCTGCAGTGGTGCCTCTGCCACTACGTCCCGGATCGCGTACTCGCCGCGCACCGCCTCCGCGAGAACCTCC
GGCAACGGGACGTCTTCCAGCGGCTCAGG
ORF - retro_hvul_96 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
59.47 % |
Parental protein coverage: |
65.59 % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | AHAVQTKTVLFDFSLVSAAQGDEAMRRLREAVAGLDVGLLVNNAGVAKPGAMYLHEADVEAWARMIRVNV |
| AH.V.....L.D...VSA..G.E.M.RLR.AV.GL.VG.LVNNAGVA.P.A.YLHEAD..AW..MIRVN. |
Retrocopy | AHCVHVLAILID--RVSA--GEEEMGRLRQAVEGLEVGVLVNNAGVATPHATYLHEADADAWVKMIRVNL |
|
Parental | LALTEVTAAVLPGMVRRGRGAVVNLGSGSASVLPSFPLYSVYAATKRYVAEFSRSLAVEYGSSGIDVQCQ |
| .A.TEVTAAVLPGMV.RGRGAVVN.GSG.A..LPS.PLYSVYAATKRYV..FSRSL.VEY...GIDVQCQ |
Retrocopy | CAVTEVTAAVLPGMVGRGRGAVVNIGSGAAEALPSYPLYSVYAATKRYVSHFSRSLYVEYSGKGIDVQCQ |
|
Parental | VPFLVETNMVSSAVK--ANLILQFVL-TPDAYAYAAVRWIGHGR-LCVPNVAHRFQGWYAGLFPDFVNDA |
| .P..V.T.MV...V...A.L.......T.DAYA.AA.RWIG..R..C.PN..HR.Q.......PD.V..A |
Retrocopy | APLYVDTKMVTNMVTRGAGLLSRLIVPTSDAYAGAAARWIGFRRPVCMPNLGHRLQWCLCHYVPDRVLAA |
|
Parental | FRLEKNRGQRAILRRVK |
| .RL..N..QR....R.. |
Retrocopy | HRLRENLRQRDVFQRLR |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Hordeum vulgare was not studied using RNA-Seq expression data.
Hordeum vulgare was not studied using ChIP-Seq data.
Hordeum vulgare was not studied using EST data.
Hordeum vulgare was not studied using FANTOM5 data.
retro_hvul_96 was not experimentally validated.
Retrocopy orthology:
Hordeum vulgare does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
2 parental genes, and
3 retrocopies.