RetrogeneDB ID: | retro_itri_1093 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393374.1:1309859..1310269(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CBX3 | ||
Ensembl ID: | ENSSTOG00000006223 | ||
Aliases: | None | ||
Description: | chromobox homolog 3 [Source:HGNC Symbol;Acc:1553] |
Percent Identity: | 58.87 % |
Parental protein coverage: | 75.41 % |
Number of stop codons detected: | 5 |
Number of frameshifts detected | 3 |
Parental | KSKKVEEAEPEEFVVEKVLDRRVVNGKVEY-FLKWKGFTDADNTWEPEENLDCPELIEAFLNSQKAGKEK |
.S.K..EA.P.EF.VEKVLD...VN.KV.Y.FL...G....D....P.EN....ELI..FLNSQKAG.EK | |
Retrocopy | ESRKRSEADPKEFMVEKVLD*CEVNEKVDY<FLEVEGIYRYDPC-SPKEN*YLLELIKDFLNSQKAG*EK |
Parental | DGTKRK-SLSDSESDDSKSKKKRDAADKPRGFARGLDPERIIGATDSSGELMF-LMKWKDSDEADLVLAK |
DGTKRK.SLSDS...DSK..K..D.ADKPRGFA.GLDP....G.TD...EL.F..MKWKD.DEA.L.LA. | |
Retrocopy | DGTKRK>SLSDSDPEDSKLRKNGDVADKPRGFATGLDP**TAGVTDNNEELAF<FMKWKDADEAGLELAR |
Parental | E |
. | |
Retrocopy | D |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000005969 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000002897 | 11 retrocopies | |
Callithrix jacchus | ENSCJAG00000007952 | 8 retrocopies | |
Gorilla gorilla | ENSGGOG00000025853 | 6 retrocopies | |
Loxodonta africana | ENSLAFG00000006907 | 3 retrocopies | |
Mus musculus | ENSMUSG00000029836 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000016583 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000011713 | 9 retrocopies | |
Rattus norvegicus | ENSRNOG00000011814 | 2 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000017913 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000016711 | 4 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000006223 | 4 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000023986 | 3 retrocopies |