RetrogeneDB ID: | retro_itri_1520 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393522.1:221374..221775(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RRP36 | ||
Ensembl ID: | ENSSTOG00000009511 | ||
Aliases: | None | ||
Description: | ribosomal RNA processing 36 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:21374] |
Percent Identity: | 80.28 % |
Parental protein coverage: | 64.98 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | DPRFDDLSGEYNPEVFDKTYQFLNDIRAKEKELVKKQLKKRLSGEEHEKLQQLLQRMEQQEMAQQERKRQ |
DPRFDDLSGEYNPEVFDKTY.FLND..AKEKELVKKQLKK.LSGEEH.....L.Q.....E...Q....Q | |
Retrocopy | DPRFDDLSGEYNPEVFDKTY*FLNDM-AKEKELVKKQLKKHLSGEEH---EKLQQLLQRME---QQEMAQ |
Parental | QELRLALKQERRTQAQQGHRPYFLKKSE-QRQLVLAEKFKELKRSKKLESFLSRKRHRNAGKDKRHLPLS |
QELR.ALK..RRTQAQQGHRPYFLKKS..QRQLVLAEKFKELKRSKKLESFLSRKR.RNAGKDKRHLPLS | |
Retrocopy | QELRPALKLGRRTQAQQGHRPYFLKKSN<QRQLVLAEKFKELKRSKKLESFLSRKRYRNAGKDKRHLPLS |
Parental | RE |
RE | |
Retrocopy | RE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000012525 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000012699 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000009511 | 1 retrocopy |
retro_itri_1520 ,
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