RetrogeneDB ID: | retro_itri_1673 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393623.1:965052..965413(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TMEM47 | ||
Ensembl ID: | ENSSTOG00000019440 | ||
Aliases: | None | ||
Description: | transmembrane protein 47 [Source:HGNC Symbol;Acc:18515] |
Percent Identity: | 64.52 % |
Parental protein coverage: | 68.33 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 1 |
Parental | RKPASLDSWHCEGCLSCNWQIATLALLLGGAAII-LIAFLVGLISICVGSRRRFYRPVAVMLFAAVVLQV |
.KPASLD.WH.....S..WQIATLALLL.G...I.L.AFLVGLI.I.VG..R.FYR.VAVMLF.AVVL.V | |
Retrocopy | QKPASLDIWHFKSTFSSVWQIATLALLL-GGIAI>LTAFLVGLIYIYVGY*RCFYRLVAVMLFEAVVL*V |
Parental | CSLVLYPIKFIETVSLKIYHEFNWGYGLAWGATIFSFGGAILYCLNPKNYEDYY |
..LV.Y.IK.IE.VSLK.YHEF........G...FSF.GAI.YCLN.KNYEDYY | |
Retrocopy | *DLVFY*IKLIEIVSLKFYHEFK--SVMVCGVQLFSFEGAIFYCLNLKNYEDYY |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Dasypus novemcinctus | ENSDNOG00000006509 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000004530 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000019440 | 1 retrocopy |
retro_itri_1673 ,
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