RetrogeneDB ID: | retro_itri_1823 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393911.1:111051..111646(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TMEM38B | ||
Ensembl ID: | ENSSTOG00000003014 | ||
Aliases: | None | ||
Description: | transmembrane protein 38B [Source:HGNC Symbol;Acc:25535] |
Percent Identity: | 80.2 % |
Parental protein coverage: | 68.04 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 3 |
Parental | AMLHCFGGGILSCILLAEPPLRFFANHTNVLLASSIWYIIFFCP-WDLISQGYSFLP-VQLLAAGMKE-V |
AMLHCFGGG.LSC.LL.E.PLRF.ANHTN.LLASSI.Y.I...P.WDLIS.GYSFL...QLLA.GMKE.V | |
Retrocopy | AMLHCFGGGFLSCVLLTELPLRFLANHTNILLASSIIYTIXXXP>WDLIS*GYSFLI>AQLLAVGMKE<V |
Parental | TRTWKIIGGITHANSYYKNGWLVMIAIGWAQGAGGIIITNFEQLLKGDWKPEGNEWLKMSYPSKVTLLGS |
.RTWKI.GG.THANSYYKNGWLVMIAI.WAQGAGGIII.NFE.L.KGDW.PE..EWLKMS..SKV.LL.S | |
Retrocopy | IRTWKIVGGVTHANSYYKNGWLVMIAIRWAQGAGGIIIMNFE*LVKGDWNPEEVEWLKMSCLSKVILLES |
Parental | LI-FTFQHTKHLTISKHNLMFLYTIFLVTTKITMMITETSSVTLAPFEDILSRMLFGWQHQF |
LI.FTFQHTK.LTISKHNLMFLYTIFLV.TKITMM.TET.SVTLAPFE.ILSR.LFGWQ.QF | |
Retrocopy | LIFFTFQHTKYLTISKHNLMFLYTIFLVATKITMMVTET-SVTLAPFEHILSRLLFGWQQQF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000002467 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000003014 | 7 retrocopies |
retro_itri_1553, retro_itri_1708, retro_itri_1789, retro_itri_1823 , retro_itri_1824, retro_itri_1826, retro_itri_1845,
|