>retro_itri_511
CTGGAAGAGAACAACATGATCATGTACATGGAAAAGAAGGTGCTGGAAGACCTTGCTATAGTGAGTGACAAAACTTCGGG
TTCATGAAGAAGAGGTTCTTCACTTTCTGGGAAGATTATTATGACATCTCCAACCAGGTCGACTTCATCATCTGTCTGGG
GGTGACGGGATCCTGCTCTGTGCCTCCTCGCTCTTCCAGGGAGAGTGCCTCTGGTTATGGCGTTCTACCTGGGCTCCCTG
AGCTTCCTGACCCTGTTCAACCTCAAGAACTTTCAGTCCCAAGTAACCCAGGTGATAGTAGGGAATGCAGCTATTGTTCT
TCGGAGTGGGCTGAGGGTCAGGGTGGTGAAGGAGCTCAGAGGCAAGAAGAGGACCACCCATAATGCGTTCAGTGAGAATG
GCCTGCCAGCCCCAGGCCTGGACACAGAGATTGGGAAGCAGCCCATGCAGTACCAGATGTTGAACGAAGTGATGACTGAT
AGAGGTCCCTCCTCATACCTGTCCAACATGAATGTCTACCTGGACAGACACCTCATGACCACGGTGCAGGGCAATGCAGT
GATTGTGTCCACCCGGACCAGCGGCATAGTTTATGCAGCTGCAGCGGGAGCCTCCATGATCCACCCCAAAGTGCCGGCCA
TTATGCTCACACCCATCTGCTCACACTTGCCGTCCTGCTCGCCCAAGGTGGTCCCTGCAGGGGTCGAGCTGAAGATCATG
GTGTCACCAGAAGCCAGGAACACTGCATGGGTGTCCTTGGATACATGGAAGCCTCAGGAAGTCTGCCATGGAAACAGCAT
CACCGTCACTGCCTCCTGCCACCTGCTGCCCTCCATTTGTGTGCGGGGCCAGGTGAGCGACTGGTTTAAGAGCCTGGCTC
AGTGTCTGCACTGGACATGAGGAAGAAGCCAGCCCTCATGGAGGATGAGGAGGAT
ORF - retro_itri_511 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
74.84 % |
Parental protein coverage: |
53.31 % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
4 |
Retrocopy - Parental Gene Alignment:
Parental | LQENNMIVYVEKKVLEDPAIACD-DNFGPVKKKFCTFREDYDDISNQIDFIICLG-GDGTLLYASSLFQG |
| L.ENNMI.Y.EKKVLED.AI..D..NFG..KK.F.TF.EDY.DISNQ.DFIICLG.GDG.LL.ASSLFQG |
Retrocopy | LEENNMIMYMEKKVLEDLAIVSD<QNFGFMKKRFFTFWEDYYDISNQVDFIICLG<GDGILLCASSLFQG |
|
Parental | S-VPPVMAFHLGSLGFLTPFNFENFQSQVTQVIEGNAAIVLRSRLKVRVVKELRGKRMTVHNGLSENGLP |
| ..VP.VMAF.LGSL.FLT.FN..NFQSQVTQVI.GNAAIVLRS.L.VRVVKELRGK..T.HN..SENGLP |
Retrocopy | E<VPLVMAFYLGSLSFLTLFNLKNFQSQVTQVIVGNAAIVLRSGLRVRVVKELRGKKRTTHNAFSENGLP |
|
Parental | APGLDPEVGKQAMQYQVLNEVVIDRGPSSYLSNVDVYLDGHLITTVQGDGVIVSTPTGSTAYAAAAGASM |
| APGLD.E.GKQ.MQYQ.LNEV..DRGPSSYLSN..VYLD.HL.TTVQG..VIVST.T....YAAAAGASM |
Retrocopy | APGLDTEIGKQPMQYQMLNEVMTDRGPSSYLSNMNVYLDRHLMTTVQGNAVIVSTRTSGIVYAAAAGASM |
|
Parental | IHPNVPAIMLTPICPHSLSFRPIVVPAGVELKIMLSPEARNTAWVSLDGRKRQEIRHGDSITITTSRYPL |
| IHP.VPAIMLTPIC.H..S..P.VVPAGVELKIM.SPEARNTAWVSLD..K.QE..HG.SIT.T.S...L |
Retrocopy | IHPKVPAIMLTPICSHLPSCSPKVVPAGVELKIMVSPEARNTAWVSLDTWKPQEVCHGNSITVTASCHLL |
|
Parental | PSICVRDPVSDWFESLAQCLHW-NVRKKQAHFAEDEED |
| PSICVR..VSDWF.SLAQCLHW...RKK.A...EDEED |
Retrocopy | PSICVRGQVSDWFKSLAQCLHW<DMRKKPA-LMEDEED |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Ictidomys tridecemlineatus was not studied using RNA-Seq expression data.
Ictidomys tridecemlineatus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_itri_511 retrocopy.
Ictidomys tridecemlineatus was not studied using FANTOM5 data.
retro_itri_511 was not experimentally validated.
Retrocopy orthology:
Ictidomys tridecemlineatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
2 parental genes, and
2 retrocopies.