>retro_itri_673
GTAGAGAGAGAAACGAGGAAAGATGAGTTACTGGATATTGCCAAGTCAAAACAAGAATGTACAAATTCAGAACTGCATAA
TTTGAGACAGATTTATGTAAAAATAACAGAGTTATCTGCAGTTTTTTAGTTTCAATGTGGAAAATTCTCCGGAATTAACA
CAAATATATACTTCAAAGATTGAGAAATTGAAGGCCCTGTCATCCAGTATAGACATATGTTTATCAGACCTTGACAAAAA
CCACCTAAAAGTTGATGCTAAGAGGGAGAAAAATCAGAAGTCACTGGTTAAGGACCCAAAATCTGAGACTACATTGGCTC
AGTAAAATAGGCCAGACAAGATTTCTTGTGAGGTATGCAAAGGAAAGAAACTACAGATTAATACTGAATTGGGAAAAAAT
GTATAATTGTTTTCTCATCTCTGTTTATAAATACTTAATGGAGAAATAAAAGTCTTGGTCTCTGGGTGGAAAAATCCAGA
GTGAACCAAAAAAAAAAAATCACAATGTGCAAGATCCAAGAAACATCACCAAAAGGTGGTGGAATTAGGTTTCAGAATGA
AGAGAAGCAGCTCTCGGACACTTTCACATCTTTACCTGATGTAAAGCAGTGGCATGATGTCAATGTTTACCTAGGCCTGG
CCAACTGTTCTGATTCAAAGCCACCTGAAAAGCTGAATGTGGACTGTCATGACCTTATGGAAAGTTCTGAGATTTCATGT
GGCCCCAGGAATGAAGGATGTCAGGATGGCAGAGACCCATGTGAATCCAAGTGCTGCTACTCGAGTAACTTCATAATCGA
AGACCCAGGTCACATGTCTGATATGGAATGGATGAGTATTTTCAATCCTTCTAAAATGCTAAGAATTACTCACCATAAAT
CTGTGTGCACTTGTTCAGGAAGTGTCAGTGCCACAAAATATAACTCCTCTATAAGTAAGCTAATCTCCATCCAGCATTCC
CACTGTTTGAGTTCTCCAAAGTCTGTCCTAAGAAAGGATGAGACAGAGACCCCTCCTGATAAAAATAATTTCTCCAAGGG
TTTGTTAATCAACAAAGATGCAGTATTTTCCAGC
ORF - retro_itri_673 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
79.28 % |
Parental protein coverage: |
83.84 % |
Number of stop codons detected: |
2 |
Number of frameshifts detected |
4 |
Retrocopy - Parental Gene Alignment:
Parental | VEREKRKDELLDIAKSKQERTNSELHNLRQIYVKQ-QSDLQFLNFNVENSQELIQIYDSKIEESKALTSS |
| VERE.RKDELLDIAKSKQE.TNSELHNLRQIYVK..QS.LQF..FNVENS.EL.QIY.SKIE..KAL.SS |
Retrocopy | VERETRKDELLDIAKSKQECTNSELHNLRQIYVKI>QSYLQFFSFNVENSPELTQIYTSKIEKLKALSSS |
|
Parental | RDMCLSDLDNNHLKVDAKREKSQKSLVKDPKFETTLAQQNRPDKISCEVCKGKKLQINTE-SGEKNIIAL |
| .D.CLSDLD.NHLKVDAKREK.QKSLVKDPK.ETTLAQ.NRPDKISCEVCKGKKLQINTE..G.K.II.. |
Retrocopy | IDICLSDLDKNHLKVDAKREKNQKSLVKDPKSETTLAQ*NRPDKISCEVCKGKKLQINTE<IGKKCIIVF |
|
Parental | SSLFT-KDLMEKQKSWSLGGKIQSE-PENKITLCKIHETSSKGGGIRFQNEEKQLWESSASLPDEKQWHD |
| SSLF..K.LMEK.KSWSLGGKIQSE......T.CKI.ETS.KGGGIRFQNEEKQL.....SLPD.KQWHD |
Retrocopy | SSLFI<KYLMEK*KSWSLGGKIQSE>XXXXXTMCKIQETSPKGGGIRFQNEEKQLSDTFTSLPDVKQWHD |
|
Parental | VSVYLGLTDCSDAKPPEKLDVDCHDLMEKSEMSCGPRNEGCQSDSDLYESKCCHPSNFIIEAPGHMSDME |
| V.VYLGL..CSD.KPPEKL.VDCHDLME.SE.SCGPRNEGCQ...D..ESKCC..SNFIIE.PGHMSDME |
Retrocopy | VNVYLGLANCSDSKPPEKLNVDCHDLMESSEISCGPRNEGCQDGRDPCESKCCYSSNFIIEDPGHMSDME |
|
Parental | WMSIFKPSKVQRIVRHKSVCTCSGSVSATKYNSSASELIAIQHSHCLSSSKSALREDETEAPPDKNNLSK |
| WMSIF.PSK..RI..HKSVCTCSGSVSATKYNSS.S.LI.IQHSHCLSS.KS.LR.DETE.PPDKNN.SK |
Retrocopy | WMSIFNPSKMLRITHHKSVCTCSGSVSATKYNSSISKLISIQHSHCLSSPKSVLRKDETETPPDKNNFSK |
|
Parental | GLLINKEAALSS |
| GLLINK.A..SS |
Retrocopy | GLLINKDAVFSS |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Ictidomys tridecemlineatus was not studied using RNA-Seq expression data.
Ictidomys tridecemlineatus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_itri_673 retrocopy.
Ictidomys tridecemlineatus was not studied using FANTOM5 data.
retro_itri_673 was not experimentally validated.
Retrocopy orthology:
Ictidomys tridecemlineatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
2 parental genes, and
3 retrocopies.