RetrogeneDB ID: | retro_itri_851 | ||
Retrocopy location | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
| Coordinates: | JH393333.1:6995486..6995769(+) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | CDIPT | ||
| Ensembl ID: | ENSSTOG00000001488 | ||
| Aliases: | None | ||
| Description: | CDP-diacylglycerol--inositol 3-phosphatidyltransferase [Source:HGNC Symbol;Acc:1769] |
Retrocopy-Parental alignment summary:
>retro_itri_851
AGTCACAAGATGATCAACCTCTCTGGGAATCCAGTGCTTCGGATCCACTACACCTCCAGGCCTGCTCTGTTCACCCTATG
TGCTGGAAATGAGTTCTTCTACTGCCTCCTCTACCTGTTCAATTTCTCCAAGGGACCCTTAGTTGGCTCTGTGGGGCTTT
TCTGAATGGGTCTCTGGGTCACCGCCCCATCACTTTGCTCAAGTCCCTCATCAGTTCATCCACCTGATCACAGCTGCCCA
CAACATGGCTGCCCTGGATGCGGCAGAGTGTGCCGAGAAGAAG
ORF - retro_itri_851 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 86.6 % |
| Parental protein coverage: | 70.9 % |
| Number of stop codons detected: | 1 |
| Number of frameshifts detected: | 2 |
Retrocopy - Parental Gene Alignment:
| Parental | SHKMIDLSGNPVLRIYYTSRPALFTLCAGNELFYCLLYLFNFSEGPLVGSVGLFRMGLWVTA-PIALLKS |
| SHKMI.LSGNPVLRI.YTSRPALFTLCAGNE.FYCLLYLFNFS.GPLVGSVGLF.MGLWVTA.PI.LLKS | |
| Retrocopy | SHKMINLSGNPVLRIHYTSRPALFTLCAGNEFFYCLLYLFNFSKGPLVGSVGLF*MGLWVTA<PITLLKS |
| Parental | LIS-VIHLITAARNMAALDAADRAKKK |
| LIS..IHLITAA.NMAALDAA..A.KK | |
| Retrocopy | LIS<FIHLITAAHNMAALDAAECAEKK |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Ictidomys tridecemlineatus was not studied using RNA-Seq expression data.
Ictidomys tridecemlineatus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_itri_851 retrocopy.
Ictidomys tridecemlineatus was not studied using FANTOM5 data.
retro_itri_851 was not experimentally validated.
Retrocopy orthology:
Ictidomys tridecemlineatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 1 parental gene, and 2 retrocopies.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Ictidomys tridecemlineatus | ENSSTOG00000001488 | 2 retrocopies |
retro_itri_1247, retro_itri_851 ,
|