RetrogeneDB ID: | retro_itri_866 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393335.1:5066658..5066966(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSSTOG00000022984 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | POLE3 | ||
Ensembl ID: | ENSSTOG00000027365 | ||
Aliases: | None | ||
Description: | polymerase (DNA directed), epsilon 3, accessory subunit [Source:HGNC Symbol;Acc:13546] |
Percent Identity: | 94.23 % |
Parental protein coverage: | 70.07 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MAERPEDLNLPNAVITRIIKEALPDGVNISKEARSAISRAASVFVLYATSCANNFAMKGKRKTLNASDVL |
MAERPEDLNLP.AVITRIIKEALP.GVNISKEA.SAIS..ASVFVLYATSCANNFAMKGKRKTLNASDVL | |
Retrocopy | MAERPEDLNLPSAVITRIIKEALPEGVNISKEAQSAISCTASVFVLYATSCANNFAMKGKRKTLNASDVL |
Parental | SAMEEMEFQRFITP-LKEALEAYRREQKGKKEAS |
SAMEEMEFQRFITP.LKEALEAYRREQKGKKEAS | |
Retrocopy | SAMEEMEFQRFITP<LKEALEAYRREQKGKKEAS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000017917 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000000313 | 1 retrocopy | |
Dipodomys ordii | ENSDORG00000003073 | 2 retrocopies | |
Monodelphis domestica | ENSMODG00000004358 | 3 retrocopies | |
Mus musculus | ENSMUSG00000028394 | 2 retrocopies | |
Pteropus vampyrus | ENSPVAG00000004717 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000015392 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000005279 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000027365 | 1 retrocopy |
retro_itri_866 ,
|
Tupaia belangeri | ENSTBEG00000005211 | 1 retrocopy |