RetrogeneDB ID: | retro_itri_9 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393587.1:1616037..1616913(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSSTOG00000023753 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | OTUD6B | ||
Ensembl ID: | ENSSTOG00000002954 | ||
Aliases: | None | ||
Description: | OTU domain containing 6B [Source:HGNC Symbol;Acc:24281] |
Percent Identity: | 56.33 % |
Parental protein coverage: | 51.14 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | EEEQLMRKHRKEKKELQAKIQSMKNAVPKNDKKRRKQLTEDVAKLEKEMEQKHKEELEQLRLTCKENK-I |
E.....R.H..EKKELQA.IQSMKN.VPK.DKK.RKQL..DVA.LE.EMEQ.H..ELE........N... | |
Retrocopy | EHQRMIRRHHREKKELQARIQSMKNSVPKSDKKKRKQLLLDVARLEAEMEQRHQQELERFQENFPDNSDL |
Parental | DSVAVNISNLALENQPPRISKAQKRREKKAALEKEREERIAEAEIENLSGARHVESEKLAQILAARELEI |
DS.........LENQPPR.S.AQ.RRE..AALE....ERIA.AE.E.....R..E..K.A.IL....LE. | |
Retrocopy | DSITEDLAKMDLENQPPRVSRAQRRRERRAALERDSLERIAKAEMEHMASFRREEEKKVAAILESKNLEM |
Parental | KQIPSDGHCMYRAIEDQL |
K.IP.DGHCMYRAI.DQL | |
Retrocopy | KDIPADGHCMYRAIQDQL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |