>retro_lafr_581
CCCTTCACTGTCAGTTTTGAGCACCTACTCAACCCTGTGTCACCCACCCGCAGCAGCCAGGGGCCCAACTGGCGGCCATT
GTCAGGATTTTTTCCTCCTATGACTCCAACAGGAAAGTTTCTTCTTTCCCAGCTAATGCTGATGCCACCAAGGGAACTCT
TCAAAAAGACACCTCATCAGATTGCTTTGATGGGTGTTGGAAACAGGGACCGGTCTGTGGACATAAGTAGGCTTCAGCTA
GCTTTAGCCAAGTGCCAGTCAAACCTGCCAACCCAGAGTAAAGCTAGCTTCTCTAGTAGTCTCAGTGACCCAGACCTAGA
TTCTTCCAATTCTGGGTTTCACAGTTTGGTTGCCTCTCAAATCACAGAAGCTTTAGTCAATGGGCCAAAACCACCTATTG
AAAGCCATTTTCAACCAGAGTTTTTCTACCTCCACTCCACATTTGTGAGGATGAGTTGGCGTGTCTAAATCCAACGGAGA
CTGACCATGCAATTCAATGGGATAAATCAATGTGTGTGAAGAATAGCACTGGTGGAGAGATGAAACAAATAATGGCCAAA
GCCTTCAAAAGCCCCTTATCTTCTCCTCAACAAACACAGCTCTTTGGAGAGTTGGGAAAAGATCCCAAACGTGTTTATCA
TATTGGCCTGACTCCAGCCAAACATCCTGATCTCATGCAAAACTACTCTGTAGTTGCTATAGAAGTGTTGCTGAAATTAA
TCCAGTCAAGCCAGATAACCGAGTATTTTTCAGTCCTGGTCAATATGAACATGTCCTTACATTCAATGGAAGTTGTAATT
CAGCGAACTACAGCTGTTGATCTACCTCTTGAATTTATCCACCTTTATATATCAAGTTGCATCTCTACTTGTGAACAATT
TAAGGATCATTTTGTG
ORF - retro_lafr_581 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
73.77 % |
Parental protein coverage: |
60.44 % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
1 |
Retrocopy - Parental Gene Alignment:
Parental | PKTVSFIHIATKMPGVTQGVRPPDNLLAQGFLPPITPPEKFFLSQLMLAPPRELFKKTPRQIALMDVGNM |
| P.TVSF.H........T.....P......GF.PP.TP..KF.LSQLML.PPRELFKKTP.QIALM.VGN. |
Retrocopy | PFTVSFEHLLNPV-SPTRSSQGPNWRPLSGFFPPMTPTGKFLLSQLMLMPPRELFKKTPHQIALMGVGNR |
|
Parental | GQSVDISGLQLALAERQSELPTQSKASFPSILSDPDPDSSNSGFDSSVASQITEALVSGPKPPIESHFRP |
| ..SVDIS.LQLALA..QS.LPTQSKASF.S.LSDPD.DSSNSGF.S.VASQITEALV.GPKPPIESHF.P |
Retrocopy | DRSVDISRLQLALAKCQSNLPTQSKASFSSSLSDPDLDSSNSGFHSLVASQITEALVNGPKPPIESHFQP |
|
Parental | EF-IRPPPPLHVCEDELAWLNPTEPEHTIQWDKSMCVKNSTGVEIKRIMAKAFRSPLSSPQQTQLLGELE |
| EF...PP..LH.CEDELA.LNPTE..H.IQWDKSMCVKNSTG.E.K.IMAKAF.SPLSSPQQTQL.GEL. |
Retrocopy | EF<FLPP--LHICEDELACLNPTETDHAIQWDKSMCVKNSTGGEMKQIMAKAFKSPLSSPQQTQLFGELG |
|
Parental | KDPKLVYHIGLTPAKLPDLVENNPLVAIEMLLKLMQSSQITEYFSVLVNMDMSLHSMEVVNRNRLTTAVD |
| KDPK.VYHIGLTPAK.PDL..N...VAIE.LLKL.QSSQITEYFSVLVNM.MSLHSMEVV.....TTAVD |
Retrocopy | KDPKRVYHIGLTPAKHPDLMQNYSVVAIEVLLKLIQSSQITEYFSVLVNMNMSLHSMEVVIQR--TTAVD |
|
Parental | LPPEFIHLYISNCISTCEQIKDKYM |
| LP.EFIHLYIS.CISTCEQ.KD... |
Retrocopy | LPLEFIHLYISSCISTCEQFKDHFV |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Loxodonta africana was not studied using RNA-Seq expression data.
Loxodonta africana was not studied using ChIP-Seq data.
Loxodonta africana was not studied using EST data.
Loxodonta africana was not studied using FANTOM5 data.
retro_lafr_581 was not experimentally validated.
Retrocopy orthology:
Loxodonta africana does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
2 parental genes, and
8 retrocopies.