RetrogeneDB ID: | retro_lafr_704 | ||
Retrocopylocation | Organism: | Elephant (Loxodonta africana) | |
Coordinates: | scaffold_31:10729026..10729432(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ATG10 | ||
Ensembl ID: | ENSLAFG00000013183 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 73.19 % |
Parental protein coverage: | 63.08 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | FEVLETAAASEVIKYEYHVLYSCSYQVPVLYFRASFLDGRPLTLK-DIWERVHECYKTRLLQGPWDTITQ |
.EV.ETA.A.EVIKYEY.VLYSCSYQVPVLYFRA.F.DGR.LTLK.DIW..VHECY...LL.GPWDTITQ | |
Retrocopy | WEVMETAVALEVIKYEYPVLYSCSYQVPVLYFRAIF*DGRTLTLK<DIWKTVHECYQMQLLHGPWDTITQ |
Parental | QEHPILGQPFFVLHPCKTNEFMTPVLQNSQKIKRNVNYITSWLS-IVGPVVGLNLPLS-YANTTFQGE |
.EHPIL.Q.FFVLHPCK.NE.M.PVL.NSQKI.RN..YITSWLS...G...GLNLPLS..AN.T.Q.. | |
Retrocopy | *EHPILEQHFFVLHPCKMNELMIPVLKNSQKINRNIGYITSWLSKNLGLTFGLNLPLS<LANVTSQDD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Loxodonta africana | ENSLAFG00000013183 | 2 retrocopies |
retro_lafr_704 , retro_lafr_705,
|
Oryctolagus cuniculus | ENSOCUG00000008736 | 1 retrocopy | |
Vicugna pacos | ENSVPAG00000009426 | 1 retrocopy |