RetrogeneDB ID: | retro_lafr_910 | ||
Retrocopylocation | Organism: | Elephant (Loxodonta africana) | |
Coordinates: | scaffold_48:15513284..15513673(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RBP7 | ||
Ensembl ID: | ENSLAFG00000028419 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 70.23 % |
Parental protein coverage: | 97.74 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | ADFRGTWNLLSNDNFEGYMLALGIDFATYKIAQLLKSQKVTEQ-NGDSFIIHTHSSLKNHLVKFKVGEEF |
.D...T.NLLS.DNF.GYMLA.GIDFAT.K.A.LLK.QKV.EQ.NGDSF..HT.SSL.N.L.KFK..EEF | |
Retrocopy | SDLSSTCNLLSRDNFKGYMLAFGIDFATHKLAKLLKPQKVIEQ<NGDSFMTHTESSLRNYLIKFKN*EEF |
Parental | DEDNKGLGNRKCKSLVTWNNDRLTCVQKGEKKNRGWTHWLEGDKLHLEMFCEGQLCKQAFQ |
.EDNKGLGNRKC.SL.TW.N.RLTC..KG.KKN.G.THW..GD.LH.EM.CEGQ.CKQ.FQ | |
Retrocopy | LEDNKGLGNRKCNSLATWDNGRLTCI*KGKKKNGGCTHWVQGDDLHREMSCEGQVCKQRFQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000019753 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000028419 | 1 retrocopy |
retro_lafr_910 ,
|