RetrogeneDB ID: | retro_lcha_70 | ||
Retrocopylocation | Organism: | Coelacanth (Latimeria chalumnae) | |
Coordinates: | JH127196.1:498037..498640(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MAD1L1 | ||
Ensembl ID: | ENSLACG00000017346 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 61.46 % |
Parental protein coverage: | 92.34 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | PHLWGNMLPLWCAESLSLLSVKYNCTTLKPFSDLHRQFCLDSKDIWRFFQLRHCIVQLYRDQGKVPLLGE |
P.LW......W....L......Y....LK.FSDL...F.LDS..I..FFQLRHC..Q.....GK.P..GE | |
Retrocopy | PFLWNK----WLNKGLYRIGDLYQDMILKSFSDLQKEFSLDSREI*QFFQLRHCVSQFFYGRGKAPVVGE |
Parental | LLPFYELTRCLPHTAALIYSHLISIPPASMIGPLEYWVRELELELEEGERESLMRNMYLPLREARLKLQH |
..P..EL.RCLPHTAALIYSHLIS.P.....GP..YW.RELELE..EGE.E..M.NMYLPL.EARLKLQ. | |
Retrocopy | FQPYFELARCLPHTAALIYSHLISVPQTGLKGPMGYWLRELELEMDEGEWENHMKNMYLPLQEARLKLQQ |
Parental | FKIVNRLYWTPSHLGVAGLQEGRGCWFCSAQVGDLQHMLWECENLTRFWDEVLQFCGKVLDRPIP |
FKIVNRLYWTP.HLG..GLQ..R.C.FC..Q.GDLQHMLW.CENL.R.WDE.LQFCG.VL.R.IP | |
Retrocopy | FKIVNRLYWTPAHLGAVGLQDSRRC*FCTEQIGDLQHMLWGCENLSRYWDEILQFCGVVLKRSIP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
DRP000627_gill | 0 .00 RPM | 1 .12 RPM |
DRP000627_kidney | 0 .00 RPM | 0 .58 RPM |
DRP000627_pectoral_fin | 0 .00 RPM | 3 .42 RPM |
DRP000627_pelvic_fin | 0 .00 RPM | 3 .94 RPM |
DRP000627_pharynx | 0 .00 RPM | 0 .51 RPM |
DRP000627_tail_muscle | 0 .00 RPM | 0 .43 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Equus caballus | ENSECAG00000014242 | 1 retrocopy | |
Latimeria chalumnae | ENSLACG00000017346 | 17 retrocopies |