>retro_macu_3
ATGGTGGAAACCCACATGCAGACCGGCACGACGAGGCGCGGCAGCAACCCCCGCCTCGAGTCTGCCGATCTCGTCGGCAT
CGACATCCCGCCGACCCCGCCGAGCGACGCCCGCCCCGGCGCTAAGCAGGCCACCTCCTTCCTCTCCCTCATCGTCCCCT
TCCTCCTCGCGTCCTCCTCCCATGCCCCCTCTTCCGGCGCTGCCGCTCCCGGCTCCTCTTCCTCCACCGTCGCCACCGCC
TTCGTCATCGGATCTTGGTACTTTTCCAACATCGGGGTGCTCCTGCTGAACAAGTACCTGCTCAGCATCTACGGCTATCG
CTACCCCGTCTTCCTCACGGCGCTCCACATGGCCTCCTGCTCCGCCTACAGCGCCGTTGCCCTGCGGTGGCTCTGCTTGG
TTCCCTTCCAGCCCGTCTCCTCCCGCAGGCAGCTGTTCAAGATCGCCGCCCTCGGCGCCATCTTCTGTTTCTCCGTCGTC
TGCGGCAACGCCTCCCTCCGGTTCCTGCCCGTCTCGTTCAATCAGGCCGTCGGCGCGACCACCCCCTTCTTCACGGCCAT
CTTCGCCCTCGCGATCACCTGCCGCCGCGAGCCCTCCGCCGTCTACGTCGCGCTGCTCCCCGTTGTCCTCGGCATCGTCC
TCGCCAGCAACAGCGAGCCCCTCTTCCACCCCCTGGGCTTCCTCCTCTGCCTCGGCTCCACCTCCGGTCGCGCTCTCAAG
TCCGTCGTCCAGGGAATCCTCCTCACCTCCGACTCCGAGAAGCTCAACTCCATGAACCTGCTCATGCACATGGCCCCCAT
CGCCGCCGCCATCCTGCTGCCCCTCTCCCTCTGGACCGAGCCCGGCGTCGTCCCCGCCACCGCCGCCAAGATCCGCGACG
ACCCCTACCTCGCCCTCCTCCTCTTCGCCAACGCCACCATCGCCTACCTCGTCAACCTCACCAACTTCCTCGTCACCAAG
CACACCAGCGCCCTCACCCTGCAGGTGCTCGGCAATGCCAAGGCCGCCGTCGCCGCCCTCGTCTCCGTTCTAATCTTCCG
TAATCCCGTGACGGTCATGGGTGTCACCGGCTTCGGCATCACCATCATCGGCGTCGTGCTGTACAGCGAAGCCACGAAGA
GGTCTAAGTCATCGTCTTCTTCTTCGTAG
ORF - retro_macu_3 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
61.66 % |
Parental protein coverage: |
99.37 % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | TKGNWSPPAVSGRLFTFGLVASWYSSNIGVLLLNKYLLSNYGFKYPIFLTMCHMAACSLLSYVAIAWLRV |
| ..G...P...S....T.....SWY.SNIGVLLLNKYLLS.YG..YP.FLT..HMA.CS..S.VA..WL.. |
Retrocopy | SSGAAAPGSSSSTVATAFVIGSWYFSNIGVLLLNKYLLSIYGYRYPVFLTALHMASCSAYSAVALRWLCL |
|
Parental | VPMQTVRSRLQFLKIATLSLVFCGSVVSGNVSLKYLPVSFNQAVGATTPFFTAVFAYLMTVKREAWITYI |
| VP.Q.V.SR.Q..KIA.L...FC.SVV.GN.SL..LPVSFNQAVGATTPFFTA.FA...T..RE....Y. |
Retrocopy | VPFQPVSSRRQLFKIAALGAIFCFSVVCGNASLRFLPVSFNQAVGATTPFFTAIFALAITCRREPSAVYV |
|
Parental | TLIPVVTGVIIASGGEPSFHLFGFIMCVGATAARALKSVLQGILLSSEGEKLNSMNLLLYMAPIAVVLLL |
| .L.PVV.G...AS..EP.FH..GF..C.G.T..RALKSV.QGILL.S..EKLNSMNLL..MAPIA...LL |
Retrocopy | ALLPVVLGIVLASNSEPLFHPLGFLLCLGSTSGRALKSVVQGILLTSDSEKLNSMNLLMHMAPIAAAILL |
|
Parental | PATLVMEENVVGITMALAREDFKLIWYLLFNSTLAYFVNLTNFLVTKHTSALTLQVLGNAKGAVAVVVSI |
| P..L..E..VV..T.A..R.D..L...L..N.T.AY.VNLTNFLVTKHTSALTLQVLGNAK.AVA..VS. |
Retrocopy | PLSLWTEPGVVPATAAKIRDDPYLALLLFANATIAYLVNLTNFLVTKHTSALTLQVLGNAKAAVAALVSV |
|
Parental | LIFKNPVTVTGMLGYTVTVIGVILYSEAKKRSK |
| LIF.NPVTV.G..G...T.IGV.LYSEA.KRSK |
Retrocopy | LIFRNPVTVMGVTGFGITIIGVVLYSEATKRSK |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Musa acuminata was not studied using RNA-Seq expression data.
Musa acuminata was not studied using ChIP-Seq data.
Musa acuminata was not studied using EST data.
Musa acuminata was not studied using FANTOM5 data.
retro_macu_3 was not experimentally validated.
Retrocopy orthology:
Musa acuminata does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
2 parental genes, and
2 retrocopies.