RetrogeneDB ID: retro_macu_95

Retrocopy location

• Organism: Wild banana (Musa acuminata)
• Coordinates: chrUn_random:96226547..96226857(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: GSMUA_Achr9G28870_001
• Aliases: None
• Description: None

Sequence

>retro_macu_95
TTTCCTTATAGATCCTTAGGAGAGGGTGAAGGAGGTCAAGCGATGACGCTCCTCAAATCTCCAGGCCTGCTCTGAGGTGG
AGAGAGGGAGGAGAATAGGAAAGGCAAACAAAGACTCTAGCCTATGATGCTCTGAATCCCTCCTATTTATAGAGGTCCCC
TATCAAACCCTAATGGGTCCTCCCCTAGTGGGTATTGGATCTGCATCCAATAAGATAAGGGCTCCGTCAGATATCTCATA
TCTGAACCTCTACTCATCGCAATGCCTACCATATGTGTGTGACCCTCTAGGCCTAATATCGAGCTGGCCG

Alignment

ORF - retro_macu_95 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 61.68 %
• Parental protein coverage: 79.7 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  FSLDSLGEEE-RVRRFEQSDVLAMASKRILKELKDLQKDPPTSCSAGCESLLFIEIPCQTLMGPSLVGIG
          F...SLGE.E..V.R...S...A..............KD....CS...ESLLFIE.P.QTLMGP.LVGIG
Retrocopy FPYRSLGEGE>EVKR*RSSNLQACSEVERGRRIGKANKDSSL*CS---ESLLFIEVPYQTLMGPPLVGIG

Parental  SASNKTRVPSDISYPNLYSSQCLPYVCDPLGPISSWP
          SASNK.R.PSDISY.NLYSSQCLPYVCDPLG.ISSWP
Retrocopy SASNKIRAPSDISYLNLYSSQCLPYVCDPLGLISSWP

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Musa acuminata was not studied using RNA-Seq expression data.

ChIP-Seq

Musa acuminata was not studied using ChIP-Seq data.

EST

Musa acuminata was not studied using EST data.

TSS

Musa acuminata was not studied using FANTOM5 data.

Lab

retro_macu_95 was not experimentally validated.

Homology

Retrocopy orthology:

Musa acuminata does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Musa acuminata	GSMUA_Achr9G28870_001	1 retrocopy	retro_macu_95 ,