>retro_mdom_1069
GTTGTTCCCAACGTCTCACGCGTGGAAAGGGTCCTCGGAGAGAGCGTGGCGATTGTGTCTGACAGGGAAGAATGGGAGAG
AGTTGAGTCTTTTCTCTGGGAGGAGTTGGAACAATGGCCAGTCCTTGGAATTGACTGTGAACGGGTACATGTGAAAGGCA
AAGCAAGACCTGTTTCACTCCTACAAACGGCTTCCCCTACTGGTTATCGCATTTTCATTAGTCTGCCTAAGCTGATCTCT
GGTGAAGCAGGTTTTCCCCAAGCCCTGGTGGATCTTTTAGAAGACAGCAGAACCTTAAAGGCTGGGGTTGGCTGTTGGGA
AGATGCCAGCAAGTCACTTCGGGAATATGATCTCACGCTGAGAGGATGTCTGGACCTCCGAAATCTGGCCATGAGACAGA
GGAGAGATTTGCTTCCAAATGGGCTTAGCCTGAAGTTCCTTGCTGAAACCGTACGCAGCTTTCCTCTGGACAGATCGCCT
CTTCTTCGTTCCAGCAATTGGGATGCTGAAGATCTCACTAAGGAACAGGTTGCTTATGCTGCTAGAGATGCTCAGATTTC
GGTGGCTCTCTTTCTTCGTCTTCTGCAATATCCTTTATCCATGAATTCAACCCAGAATGGACATAATGAAACCACTTGGG
AAAAAATATTGATGAAGTGCCAGGATCTTGTAGATCTTCCTTTCCATGGTAAAGGGAACAGCAGCAACATGAGAGAAGAA
AATTCCGGAAAAATGGAGGGCTCCCAGAAAACAAGAAACCTGGAATCTAGACCTGGCATGATGTCTTCAGGTGATCAGCA
AGGCAGGGACCCAGAAAACAGAAATCGAAGCCCCTCGGCAAGGGCCATTCTGCTCGGAAATCTCCACTCTATGATAACTG
CTTCTTACGTGCTCCTGGTGGACAGCCTCTATGCACGTGGGATAGAAGGAAAGCTCAGTGGTAT
ORF - retro_mdom_1069 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
89.24 % |
Parental protein coverage: |
51.47 % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
1 |
Retrocopy - Parental Gene Alignment:
Parental | VVPKVSQVERILRESVVIVSEREEWERVESFLWEELEQCPVLGIDCEWVNVKGKARPVSLLQMASPTGYC |
| VVP.VS.VER.L.ESV.IVS.REEWERVESFLWEELEQ.PVLGIDCE.V.VKGKARPVSLLQ.ASPTGY. |
Retrocopy | VVPNVSRVERVLGESVAIVSDREEWERVESFLWEELEQWPVLGIDCERVHVKGKARPVSLLQTASPTGYR |
|
Parental | ILIRLPKLISGEAGFPQTLVDLLEDSRILKVGVGCWEDASKLLREYDLTVRGCLDLRNLAMRQRRDLLPN |
| I.I.LPKLISGEAGFPQ.LVDLLEDSR.LK.GVGCWEDASK.LREYDLT.RGCLDLRNLAMRQRRDLLPN |
Retrocopy | IFISLPKLISGEAGFPQALVDLLEDSRTLKAGVGCWEDASKSLREYDLTLRGCLDLRNLAMRQRRDLLPN |
|
Parental | GLSLKFLAETILSFPLDKSPLLRSSNWDAEDLTKEQVAYAARDAQISVALFLHLLEYPLSMNSTQNGDNE |
| GLSLKFLAET..SFPLD.SPLLRSSNWDAEDLTKEQVAYAARDAQISVALFL.LL.YPLSMNSTQNG.NE |
Retrocopy | GLSLKFLAETVRSFPLDRSPLLRSSNWDAEDLTKEQVAYAARDAQISVALFLRLLQYPLSMNSTQNGHNE |
|
Parental | TTWEKILMKCQDLVDIPFHGKGNSSNTREENSGKMEGSQKTRNLKSRPGVMSSDDQQGRD-PRKQKSKPL |
| TTWEKILMKCQDLVD.PFHGKGNSSN.REENSGKMEGSQKTRNL.SRPG.MSS.DQQGRD.PRKQKSKPL |
Retrocopy | TTWEKILMKCQDLVDLPFHGKGNSSNMREENSGKMEGSQKTRNLESRPGMMSSGDQQGRD<PRKQKSKPL |
|
Parental | GKGYSARKSPLYDNCFLHAPDGQPLCTCDRRKAQWY |
| GKG.SARKSPLYDNCFL.AP.GQPLCT.DRRKAQWY |
Retrocopy | GKGHSARKSPLYDNCFLRAPGGQPLCTWDRRKAQWY |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP007412_brain |
0 .00 RPM |
61 .86 RPM |
SRP007412_cerebellum |
0 .00 RPM |
110 .99 RPM |
SRP007412_heart |
0 .00 RPM |
11 .36 RPM |
SRP007412_kidney |
0 .00 RPM |
31 .60 RPM |
SRP007412_liver |
0 .00 RPM |
19 .64 RPM |
SRP007412_testis |
0 .00 RPM |
70 .91 RPM |
Monodelphis domestica was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_mdom_1069 retrocopy.
Monodelphis domestica was not studied using FANTOM5 data.
retro_mdom_1069 was not experimentally validated.
Retrocopy orthology:
Monodelphis domestica does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
1 parental gene, and
1 retrocopy.