>retro_mdom_1072
AAAAAGAAAAGGGAAATTACAATCTTCTATCCGGCTTCTATCCAGGCAATGAAAAAAGAGCAAATGTAACAGGAGGATCA
ATGAACACCAAGCAAAAACACAGAAACTCCAGCAAACTGGACACAGGCTTTGGAAGAACTCAAAATACAATTCAAAACAC
AATTAATAGAGGCTGAAGACAATTGAGTAAAGAACATAAAAATCAAGAAGTCATCTGAAAACAGAGGCACTTGACCTAAA
ATGAGAAAATAGTGTCTTGAAAGCCAATGTTAATCAGCTTGAAAATGAAGCAAAGGAGATGAAAGATCAGAAGGAAAAGA
ATGATCAAAAAGCCAGGGATGAAATTCAGTGGAAAATATGAAACACTTCATTCACAAAACAGAAGATTTAGAAAGTTGGT
TCAGAAGAGATAGCTTAAGAATCATTGGTCTAGTGGAAGACCATGACAAAAGAAAAAGCCTGGATGTTATACTACAGAAA
ATTATTCACAAAAACTGCCCTGACATTCTACAGCAAGAGGGAAAAGTAGAGATTGAAAGAATCCACAGATCACCTCCTGT
ACTTAATCCCCAACTGACAACACCCAGGAATGTTATAGCCAAATTCAAGAACAACCAGATCAAATAAAAAATATTACAAG
TTGGTAAGAAGAAGTCATTCCGATACTATGGAACTACAGTGAGGACAACACAGGAACTGGCTGCTGTTAAGATTAAA
ORF - retro_mdom_1072 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
57.61 % |
Parental protein coverage: |
72.04 % |
Number of stop codons detected: |
5 |
Number of frameshifts detected |
2 |
Retrocopy - Parental Gene Alignment:
Parental | KDKKGTNTLSRAQKNLLEQSKRKQRGRTQQRKKSEIPGNWIQALEELKMQSKTQLREAEDNWEKNL-KTK |
| K.K........A...........Q.......K..E.P.NW.QALEELK.Q.KTQL.EAEDN..KN..K.. |
Retrocopy | KKKREITIFYPASIQAMKKEQM*QEDQ*TPSKNTETPANWTQALEELKIQFKTQLIEAEDN*VKNI>KSR |
|
Parental | ISHLETENSVLKAKINQLENEAKEMKDEAKQMKDEVKKMKDDLQRKSDQ-KENMKHLIHKTEDLENRSRR |
| .SHL.TE...LK.....L.........EAK.MKD..K...D...R...Q..ENMKH.IHKTEDLE...RR |
Retrocopy | -SHLKTEALDLK*ENSVLKANVNQLENEAKEMKDQ-KEKNDQKARDEIQ<VENMKHFIHKTEDLESWFRR |
|
Parental | DNLRIIGLPEDHDKRKSLDIILQEIIKENCPKILEQEGKVETDRIHRSPPVLNPQLTTPRNVIAKFKDYQ |
| D.LRIIGL.EDHDKRKSLD.ILQ.II..NCP.IL.QEGKVE..RIHRSPPVLNPQLTTPRNVIAKFK..Q |
Retrocopy | DSLRIIGLVEDHDKRKSLDVILQKIIHKNCPDILQQEGKVEIERIHRSPPVLNPQLTTPRNVIAKFKNNQ |
|
Parental | I----LQAAKKKSLRYQGTTVRITQDLAASTLK |
| I....LQ..KKKS.RY.GTTVR.TQ.LAA...K |
Retrocopy | IK*KILQVGKKKSFRYYGTTVRTTQELAAVKIK |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP007412_brain |
0 .00 RPM |
0 .00 RPM |
SRP007412_cerebellum |
0 .00 RPM |
0 .00 RPM |
SRP007412_heart |
0 .00 RPM |
0 .00 RPM |
SRP007412_kidney |
0 .00 RPM |
0 .00 RPM |
SRP007412_liver |
0 .00 RPM |
0 .00 RPM |
SRP007412_testis |
0 .00 RPM |
0 .00 RPM |
Monodelphis domestica was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_mdom_1072 retrocopy.
Monodelphis domestica was not studied using FANTOM5 data.
retro_mdom_1072 was not experimentally validated.
Retrocopy orthology:
Monodelphis domestica does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
1 parental gene, and
3 retrocopies.