RetrogeneDB ID: | retro_mdom_1086 | ||
Retrocopylocation | Organism: | Opossum (Monodelphis domestica) | |
Coordinates: | 3:41552288..41552748(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SC5D | ||
Ensembl ID: | ENSMODG00000013028 | ||
Aliases: | None | ||
Description: | sterol-C5-desaturase [Source:HGNC Symbol;Acc:10547] |
Percent Identity: | 54.14 % |
Parental protein coverage: | 51.84 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 2 |
Parental | VAIFLAEIRGYSKLYDRIEDSPYGWLGVILSMASFLFFTD-MSIYWIHRGLHHKLVYKRLHKPHHVWKIT |
V.IFL.....YSKLY..IEDS.Y.W..VIL.M.SFLFF.D..S.........HKL.YK.LHK.H.V..I. | |
Retrocopy | VSIFLPKVQVYSKLYECIEDS*YVWAEVILNMISFLFFND<FSLIYWFHQTLHKLLYKQLHKSHYV*NII |
Parental | TP-FASHAFHPMDGFLQGVPYHIYPFFFPLHKVVYLALYIIVNLWTISIHDGYYQVPKILEPFINGAAHH |
.P...SH..H....FLQ...YH.Y.F.FPL.KVVY..LYIIV....IS..DG.Y.VP..LE..IN..A.H | |
Retrocopy | HP<ITSHV-HSVYDFLQVLLYHKYSFLFPLQKVVYIGLYIIVKVYAISTQDGDY*VPRFLEAVINFRAYH |
Parental | TDHHLFFDYNYGQYFTL |
T.HH..FDYNY.QYF.L | |
Retrocopy | TNHHPYFDYNYVQYFML |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 0 .00 RPM |
SRP007412_cerebellum | 0 .00 RPM | 0 .00 RPM |
SRP007412_heart | 0 .00 RPM | 0 .00 RPM |
SRP007412_kidney | 0 .00 RPM | 0 .00 RPM |
SRP007412_liver | 0 .00 RPM | 0 .00 RPM |
SRP007412_testis | 0 .00 RPM | 0 .00 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000019246 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000011805 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000007436 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000013028 | 1 retrocopy |
retro_mdom_1086 ,
|
Mustela putorius furo | ENSMPUG00000005754 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000003219 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000008946 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000000490 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000011139 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000006908 | 1 retrocopy |