>retro_mdom_1439
ACTCTGGATTCAGAGATATGCCACACAAGCCTGTTCTACCGCCCAAGCCCAGATGGAAATTTGACCATCTTAAGGACTAA
TCAGGCAGAAGTTCCTATTGGGTGTCACTATCCTAGGTGGGGCAATGTAAGTAGCAGAGCTATCCAGCCTACATGGGTCC
CCTTCAGGACCACCATAGCCTCTGAAGAGAAGCTCAGCTTCTCTCTTTGTCTGATGAATGATAACTGGACTTCTGAGAGT
ACCTCAGCTGAGTTCCAGCTGGGTGACATAGCCCATCTCTAGGCAAAAGTCCACACAGGCAGCCATGTGTCCCTGAGGCT
CTTTGATGACATCTGTGTGGCCACCCTTAGCCCAGACAAGGACTCAGAGCCCCGTTACAGTATCATTGACCACCATGGGT
GCCTGGTAGATGGTCTTTCTGACTCCTCTTCAGTCTTCAGAATCCCCAGACCTAACCCAAACACTCTCCAGTTCACAGTG
GACTTGTTCCACTTTGACAGTGATCCTCAGAAACTGATTTATATTATGTATCATCTGATGGTCACTCTCATTGACCAAGA
GCCAGACCAAACAAACAAGGCCTGTTCTTTCAACAAGTCCACTAGTAGCTGGTTTCCAGTAGAAGGCCCTTCTGACATCT
GCAGATGCTGTAATATCAAAGACTGCGGAATTCCAAACCAGTCCAGGAGACTACTTTCTGTTGACAGGATCTCTGCAAAG
CCCTGGAAGAGAACAGCTCCCCTCCAGCAGCTGCAAGTGAGGGAAGCTGATGTCACTGCCGGGGCCCATGTTCTTGGCAG
TGAATGTCAATCACCACACCCCACTGGAGCCCAACCCGGATTTCATGGAAAAGAACACAGCCTTTGGCCTGAGCCTGTCT
CTGATTGATCTTGTGTTTCTTGCCATAGTCATGCTGGCCCTGGTCCTCCTCTGTAGTAAACACAAAAGTGCCTCT
ORF - retro_mdom_1439 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
89.03 % |
Parental protein coverage: |
76.63 % |
Number of stop codons detected: |
1 |
Number of frameshifts detected |
1 |
Retrocopy - Parental Gene Alignment:
Parental | TSDELIYRTSLFYRPSPDGNLTILRTNQAEVPIECHYPRWGNVSSRAIQPTWVPFRSTIASEEKLSFSLR |
| T.D..I..TSLFYRPSPDGNLTILRTNQAEVPI.CHYPRWGNVSSRAIQPTWVPFR.TIASEEKLSFSL. |
Retrocopy | TLDSEICHTSLFYRPSPDGNLTILRTNQAEVPIGCHYPRWGNVSSRAIQPTWVPFRTTIASEEKLSFSLC |
|
Parental | LMNDNWTSESTSAEFQLGDIAHLQAEVHTGSHVSLRLFVDSCVATLSPDKDSEPRYSIIDHHGCLVDGLS |
| LMNDNWTSESTSAEFQLGDIAHL.A.VHTGSHVSLRLF.D.CVATLSPDKDSEPRYSIIDHHGCLVDGLS |
Retrocopy | LMNDNWTSESTSAEFQLGDIAHL*AKVHTGSHVSLRLFDDICVATLSPDKDSEPRYSIIDHHGCLVDGLS |
|
Parental | DSSSVFRTPRPNPNTLQFTVDLFHFVSDPRKLIYITCHLTVTLTDQEPDQTNKACSFNKSTNSWFPVEGP |
| DSSSVFR.PRPNPNTLQFTVDLFHF.SDP.KLIYI..HL.VTL.DQEPDQTNKACSFNKST.SWFPVEGP |
Retrocopy | DSSSVFRIPRPNPNTLQFTVDLFHFDSDPQKLIYIMYHLMVTLIDQEPDQTNKACSFNKSTSSWFPVEGP |
|
Parental | PDICRCCNTKDCRIPNRSRRRLSVDRISAKPWKRTAPLQQLQVREADVTA-GPMFLAVNFSRHTPLEPNP |
| .DICRCCN.KDC.IPN.SRR.LSVDRISAKPWKRTAPLQQLQVREADVTA.GPMFLAVN...HTPLEPNP |
Retrocopy | SDICRCCNIKDCGIPNQSRRLLSVDRISAKPWKRTAPLQQLQVREADVTA>GPMFLAVNVNHHTPLEPNP |
|
Parental | DFMEKYTAFGLSLSLIALVVLAIVMLALVLLCRKRNSAS |
| DFMEK.TAFGLSLSLI.LV.LAIVMLALVLLC.K..SAS |
Retrocopy | DFMEKNTAFGLSLSLIDLVFLAIVMLALVLLCSKHKSAS |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP007412_brain |
0 .00 RPM |
0 .00 RPM |
SRP007412_cerebellum |
0 .00 RPM |
0 .00 RPM |
SRP007412_heart |
0 .00 RPM |
0 .00 RPM |
SRP007412_kidney |
0 .00 RPM |
0 .00 RPM |
SRP007412_liver |
0 .00 RPM |
0 .00 RPM |
SRP007412_testis |
0 .00 RPM |
0 .00 RPM |
Monodelphis domestica was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_mdom_1439 retrocopy.
Monodelphis domestica was not studied using FANTOM5 data.
retro_mdom_1439 was not experimentally validated.
Retrocopy orthology:
Monodelphis domestica does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
3 parental genes, and
3 retrocopies.