>retro_mdom_1537
ATGGCACAATGAAGCACTGTATTTCCTTCTCTTGTCACCGAGGAAAGGCTAGTTAGAACCATGCCCATGACATAGCCAAT
CTTTGAGTGTAGCTCCATATTCATCTGCAAGCCTAGTAGACCAGTTGGAAGTTAGAATTCTGTGCTATGAGAAAACAATG
GCAGCACTTGTAGAACATGCTTTACATATAAAAGATGACATTGTTAACAGTTTGCATAAAATGCAAAATAAAGATGGAGG
AGATCCATTGGCTAGACTGTTCTTAGAGGAGCATATCAGAAATATCATGGCAATAGTGAAACAACTTAATTGGGATATTG
AGGTCTTACAAGAACAGATACGTGCCAGGGATAACATTAGATATGGAACAAATTTTGCCTTAAAGAGTGTGGAGATGCGC
CAACTCCCTGGTTTGGGAGATCCTTGAGGAAGAGTAGCAAGATGTGATGCTAGCATAGCTAGATTGTCTGCAGAGCATAA
AACAACATATGAAGGTCTTTAGCACTTGAACAAAGAACAGCAGGCTGCCAAACTCATTTTGGAAACTAAAATCAAAGATG
GAGAAGGACAGATTTCCCAGCTTTTAAGCAGAGTTGACCTGTCATTATCAGAGAAAAGCATAAAGCTGAAAATGGCCCAC
AGAGATAGCAACCATCAGCTTTACCTTTTGGACATTAAATTTAAAGCTACAGTGGAAGAACTTAGTAGCCAAATTTTGTC
TTCATGGAATTGGTTGCAACAGGAACAAGAATGGATAAAAAAAAGAACTTTTACAGAAGATTGATCAACTTGCATTGATT
CTTAAGGAAAATAGTGAAATTAGTGAAAGGACCATTGAGAAGAAGTTCAGTCAGATGTCAGCAAAGCTTGATAAAATAGA
AGAGATACAAAAGAAAAATATGGACATACAGAGGCCAAAATCTGATGATAAGAAGATAAATGTCCAAATCAGCAAAATTG
AATTGCAGATGAATGAAGAGATGAAAGAAATGAAAGCAGAAGTTAATGCTGGGTTTGCAGCCATCTATGAAAGCATAGGA
TCACTCTGACAAGTTCTTGAAGCCAAAATGAAAATTGATAAAGATCAGCTACTGAAACAAATTCATCAGCTAAGGAAACA
AGAGGCTCCCATG
ORF - retro_mdom_1537 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
88.92 % |
Parental protein coverage: |
100. % |
Number of stop codons detected: |
4 |
Number of frameshifts detected |
2 |
Retrocopy - Parental Gene Alignment:
Parental | MAQRSTVLPSLVTEERRVRTMPR-HSQSLSVAPYSSASLVDQLEDRILCHEKTTAALVEHAFRIKDDIVN |
| MAQ.STV.PSLVTEER.VRTMP..HSQSLSVAPYSSASLVDQLE.RILC.EKT.AALVEHA..IKDDIVN |
Retrocopy | MAQ*STVFPSLVTEERLVRTMPM>HSQSLSVAPYSSASLVDQLEVRILCYEKTMAALVEHALHIKDDIVN |
|
Parental | SLQKMQNKGGGDRLARLFLEEHIRNITAIVKQLNRDIEVLQEQIRARDNISYGTNSALKSLEMRQLSGLG |
| SL.KMQNK.GGD.LARLFLEEHIRNI.AIVKQLN.DIEVLQEQIRARDNI.YGTN.ALKS.EMRQL.GLG |
Retrocopy | SLHKMQNKDGGDPLARLFLEEHIRNIMAIVKQLNWDIEVLQEQIRARDNIRYGTNFALKSVEMRQLPGLG |
|
Parental | DLRGRVARCDASIARLSAEHKTTYEGLQHLNKEQQAAKLILETKIKDAEGQISQLLSRVDLSLSEQSTKL |
| D..GRVARCDASIARLSAEHKTTYEGL.HLNKEQQAAKLILETKIKD.EGQISQLLSRVDLSLSE.S.KL |
Retrocopy | DP*GRVARCDASIARLSAEHKTTYEGL*HLNKEQQAAKLILETKIKDGEGQISQLLSRVDLSLSEKSIKL |
|
Parental | KMTHRDSNHQLHLLDIKFKGTVEELSSQILSARNWLQQEQE-RIEKELLQKIDQLALVVKENSEISERTI |
| KM.HRDSNHQL.LLDIKFK.TVEELSSQILS..NWLQQEQE.....ELLQKIDQLAL..KENSEISERTI |
Retrocopy | KMAHRDSNHQLYLLDIKFKATVEELSSQILSSWNWLQQEQE>GXXXELLQKIDQLALILKENSEISERTI |
|
Parental | EKKFSQMSAKLDKIEEIQKKNMDAQRPKSDDEKMNVRISKIELQMNEEMKEMKAEVNAGFAAIYESIGSL |
| EKKFSQMSAKLDKIEEIQKKNMD.QRPKSDD.K.NV.ISKIELQMNEEMKEMKAEVNAGFAAIYESIGSL |
Retrocopy | EKKFSQMSAKLDKIEEIQKKNMDIQRPKSDDKKINVQISKIELQMNEEMKEMKAEVNAGFAAIYESIGSL |
|
Parental | RQVLEAKMKIDKDQLLKQIHQLRKQEAPM |
| .QVLEAKMKIDKDQLLKQIHQLRKQEAPM |
Retrocopy | *QVLEAKMKIDKDQLLKQIHQLRKQEAPM |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP007412_brain |
0 .00 RPM |
95 .24 RPM |
SRP007412_cerebellum |
0 .00 RPM |
0 .98 RPM |
SRP007412_heart |
0 .00 RPM |
3 .19 RPM |
SRP007412_kidney |
0 .00 RPM |
27 .65 RPM |
SRP007412_liver |
0 .00 RPM |
0 .50 RPM |
SRP007412_testis |
0 .00 RPM |
2 .95 RPM |
Monodelphis domestica was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_mdom_1537 retrocopy.
Monodelphis domestica was not studied using FANTOM5 data.
retro_mdom_1537 was not experimentally validated.
Retrocopy orthology:
Monodelphis domestica does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
1 parental gene, and
2 retrocopies.