>retro_mdom_1700
GAACTCATTAGCAAGACCCTGGATGCACCAGCAATTATTACTGGCCTGGTTTCTTTGGTGTTGGAAGGAGATGGTCCAGT
TGTAGATAATGAAGAATTTTTTTCAGATCCTAGGAGACAATACCCATTGCATGATCTTGGGGAAATGGTGGAGGTGGGCA
CTGGGTCCCAAGTATGCTACTCAGAAGTATAAATGGTCTGGAAGAGCAAGAGTCACTTTTGATTTGTATAAGATGAATCC
CAAAGACGTTCTTGGATGCTTAAAGGTGAAAGCCACCATGAATGAGATGTATTCTGGGTCCTTGTGACATCAAATGTGTA
CATCAGCCAAAGCTACGATGAGAACTTATTGTGGTTTATGCCCTATGCTGCCCAGATCACCAGACATTTTCTCATCAATG
GTGGGACTTACATGTTGTATATGCTTAATGAC
ORF - retro_mdom_1700 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
71.92 % |
Parental protein coverage: |
66.2 % |
Number of stop codons detected: |
1 |
Number of frameshifts detected |
2 |
Retrocopy - Parental Gene Alignment:
Parental | ELINKTLDALAITTGLVTLVLEEDGTVVDTEEFF-QTLGDNTHFMILEKGQKWTLGPKYATQKQKKSGIA |
| ELI.KTLDA.AI.TGLV.LVLE.DG.VVD.EEFF.Q.LGDNTH.MIL.K...W.LGPKYATQK.K.SG.A |
Retrocopy | ELISKTLDAPAIITGLVSLVLEGDGPVVDNEEFF>QILGDNTHCMILGKWWRWALGPKYATQKYKWSGRA |
|
Parental | RVTFDLYKTNPKDFLGCLNVKATMYEMYSVSY-DIRCTSAKAVLR-QLLRIMSYAAQITGQFLVYGGTYM |
| RVTFDLYK.NPKD.LGCL.VKATM.EMYS.S.....CTSAKA..R..LL..M.YAAQIT..FL..GGTYM |
Retrocopy | RVTFDLYKMNPKDVLGCLKVKATMNEMYSGSL*HQMCTSAKATMR<NLLWFMPYAAQITRHFLINGGTYM |
|
Parental | LHVLND |
| L..LND |
Retrocopy | LYMLND |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP007412_brain |
0 .00 RPM |
0 .00 RPM |
SRP007412_cerebellum |
0 .00 RPM |
0 .00 RPM |
SRP007412_heart |
0 .00 RPM |
0 .00 RPM |
SRP007412_kidney |
0 .00 RPM |
0 .00 RPM |
SRP007412_liver |
0 .00 RPM |
0 .00 RPM |
SRP007412_testis |
0 .00 RPM |
0 .00 RPM |
Monodelphis domestica was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_mdom_1700 retrocopy.
Monodelphis domestica was not studied using FANTOM5 data.
retro_mdom_1700 was not experimentally validated.
Retrocopy orthology:
Monodelphis domestica does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
1 parental gene, and
2 retrocopies.