>retro_mdom_1825
CCTTTCAGCACAGGGTCAATAACATTCAAGGAAGTGGTTGTGAACTTCCCCCAAGAGGAGTGGTGCCTGTTGGATCATTC
TCAGAAAGAGCTGTATAGGGAGATCATGCTGGAGAATGTGCAGAATCTACTCTCTATGGAGCTTCTAGTTCATAGAGAAG
ATTTTATCGCCTGTTTTCAACAAAGGGAATCACCATGGCTGGTAGAGCATAAAGGCCCAAAGAACTCCTGTCCAGAGGCA
GAGATTAATTTTAAAGTGAAGGAGATGTCTGCAAAGCTAAGCCTTTTTGTGGAATGATTTGGCCCCCAAAGACGCATGAA
TCAGGATCCCTGTGATTTTATTTTGAGACAAATGTATGTCTCTAATATCAAGGTAAATAAAAATTCAAAGAGTGACTGTG
AATTCGAAAAACTGCAGAGAAATTCAGCCAATATTCAGTTCTAAATCAGTATATAAAATTGAATTCAAGAAATGACTGTT
GTCAGGATAGTGAATTCAGCAAATGCTTTCCTGAATAAGTAGGATTTATTCAGTCACCTAAGAAACCTCCTGAAATGCCC
ACGTATCAAGATAACCTGGGGGAATGGCCTTTGGTTAAAGTTTAGGCCTCATTAGACATCCAAAAAGTAAATGTGTAGAG
ATGCTTTCTGTGAGTAATAAAGGTGGGAAACCTTTCAGTCAGAACTCTGAGCTTGGTTTACATCAAATAGTCCACAATGG
AGAGAAACCTTATGAATGTAAACACTGTGGAAAGGCTTTCACAGTGATGGGCTCTCTTTCCAGGCATCAAATAATCCACA
CTGGAGAGAAACCTTATGAATGTAATCAGTATGGATAGGCTTTCACATGGAGGGGCAATCTCAGAGCATCCACATTGGAG
AGAAACTTTTATCAATGTAATCAATTTGGATAGGCTTTCACATAAAATTCCACAGTTGCTTCATGTCAGAAAATTCCCAC
TGGAGAGAAACCTCATGAG
ORF - retro_mdom_1825 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
78.68 % |
Parental protein coverage: |
54.56 % |
Number of stop codons detected: |
6 |
Number of frameshifts detected |
2 |
Retrocopy - Parental Gene Alignment:
Parental | PPSQGSITFKDVAVNFTQEEWCLLDHSQKELYREVMLENVQNLLSMELPVHREDFISCFQQKESLWLLEH |
| P.S.GSITFK.V.VNF.QEEWCLLDHSQKELYRE.MLENVQNLLSMEL.VHREDFI.CFQQ.ES.WL.EH |
Retrocopy | PFSTGSITFKEVVVNFPQEEWCLLDHSQKELYREIMLENVQNLLSMELLVHREDFIACFQQRESPWLVEH |
|
Parental | KGPKSSCPEAEANFEVKEMSAKLSLFVEGFGPQRYMNEDPCYFILREMYDSNIKVNKNPKSDCECE-EPA |
| KGPK.SCPEAE.NF.VKEMSAKLSLFVE.FGPQR.MN.DPC.FILR.MY.SNIKVNKN.KSDCE.E...A |
Retrocopy | KGPKNSCPEAEINFKVKEMSAKLSLFVE*FGPQRRMNQDPCDFILRQMYVSNIKVNKNSKSDCEFE<KTA |
|
Parental | EKFSQYSVLNRYIKLNSRNDCWQDSEYSKCFPEEVGFIQSPKK-PEMPTYQGN-PGGMAFGWSLGLIRYP |
| EKFSQYSVLN.YIKLNSRNDC.QDSE.SKCFPE.VGFIQSPKK.PEMPTYQ.N.PGGMAFG.SLGLIR.P |
Retrocopy | EKFSQYSVLNQYIKLNSRNDCCQDSEFSKCFPE*VGFIQSPKKPPEMPTYQDN<PGGMAFG*SLGLIRHP |
|
Parental | KSKCVEVLSVSNKGGKPFSQNSELGSHQIVHTGEKPYECKHCGKAFTVMGSLARHQIIHTGEKPYECKHC |
| KSKCVE.LSVSNKGGKPFSQNSELG.HQIVH.GEKPYECKHCGKAFTVMGSL.RHQIIHTGEKPYEC... |
Retrocopy | KSKCVEMLSVSNKGGKPFSQNSELGLHQIVHNGEKPYECKHCGKAFTVMGSLSRHQIIHTGEKPYECNQY |
|
Parental | GKAFIWRGDLDKHQRIHTGEKPY-ECTQCGKTFTERSNLAKHQRFHTGKKPYE |
| G.AF.WRG.L....R..T.E.....C.Q.G..FT..S..A..Q...TG.KP.E |
Retrocopy | G*AFTWRGNL----RASTLERNFYQCNQFG*AFT*NSTVASCQKIPTGEKPHE |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP007412_brain |
0 .00 RPM |
0 .00 RPM |
SRP007412_cerebellum |
0 .00 RPM |
0 .00 RPM |
SRP007412_heart |
0 .00 RPM |
0 .00 RPM |
SRP007412_kidney |
0 .00 RPM |
0 .00 RPM |
SRP007412_liver |
0 .00 RPM |
0 .00 RPM |
SRP007412_testis |
0 .00 RPM |
0 .00 RPM |
Monodelphis domestica was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_mdom_1825 retrocopy.
Monodelphis domestica was not studied using FANTOM5 data.
retro_mdom_1825 was not experimentally validated.
Retrocopy orthology:
Monodelphis domestica does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
1 parental gene, and
1 retrocopy.