RetrogeneDB ID:

retro_mdom_42

Retrocopy
location
Organism:Opossum (Monodelphis domestica)
Coordinates:X:23797347..23800569(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:ENSMODG00000007190
Aliases:None
Status:KNOWN_PROTEIN_CODING
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:ENSMODG00000003893
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_mdom_42
GCTGCCGAAGAGCAGCAAGGAGCAGCAAAGGCTGAGCCGGAGGGAGAGTTGGCTGAGCAGGAGGAGCAGGAGAGCCTCCT
TTTACAGGATGAGCCTCATGGAAGTGCTGCTGCTTCTCCGTTGTCCGTAGGAGAAGTCGGCATTGTAGAGAGTATACAGC
TGGAGAACTTTATGTGCCATTCCAGGCTTGGACCAGTGCAATTTGGGCCCAATGTCAACTTTGTGGTGGGCCAAAGAGGC
AAAAGTGCATTGCTCACAGCTCTCCTCCTTGGTCTTGGTGGAAAGTCCTTAGGATCGCCTTTAAAAGAGTTTGTGAAAGA
TGGCGAGGCTTCAGCAAACATCTTGATCACATTAAGTAACAGAGGGGAGAATGCGTACAAACCTGACTCGTATGGGGACT
CCATAATTGTGCATCAGTGCATCAGTGTAAGTGGGACTGTGAGTTACAAACTAAAAGACCAATCAGGAAGTGTAATTACT
TCTAAGAAAGCAGAACTTGCAGAAATTCTTGAACATTTTAACATACGAGTAGATAATCCAATGACCATTTTACAACAAGA
GATGGGCAGGCAGTTATTGCAAACAAGAAGTGATGGAGAGAGATACAAATTCTTTCAGAAAGTGACCCAGCTTGAACAGA
TGCATAACGATTACTTATGCATTTTGGAGAGAAAAGCCAGGACTCAGGATCAGATAGAACAAGGAGAAAAGCAGCTTCTG
GAGCTAAAACAGCAGGGCATCGAGGTAGAACAGTGTTTCCAGAGTATGGCTGCCTCAAGGAAGAGATTAGAGGATCTGAA
ACATGAGATGGCTTGGGCAGTAGTGAATGAATCAGAAAGACAAATTGAAGATATGATAAGTAATATAAATATTGGAGACC
AGGATACTATCAGATTAAATCAGAAACTGGAGGCAAGTCAGGCCAAATTTAATGAAACAACCGAGAAGTTAAAAGAAGTT
CAGGAGAAGTTGGACAAGTTAAACAAAGAAACCATTGAGTTAGAGATTGAAAGCATTCAGGCAAGAGACAATATAAATAG
AAAGAAAAAGGCCTATGAGGAAGCTGAAGATTTATATAATTCTTCCCAAAATGAATTAAAGCAATTAGAGAAGGAAAAAG
AACATTGCAACCAAATGGAAAACCTGAAAAAGAGTATGGAGCAATCAAAGTTAGAAAAACAGGAAAAAATTGCCATGTTG
AAGGAAGAGTTAAATAAGTATAAAGATCAGGAAAATTCATTTTTTGAAAAGTTGGAACACCTTCAGGAAGCTATAGAAAA
AGACAATGAAGAACATTCTAGACTTAAGAGAGAAGTATCAGATGTGCAGCAAACGCTAAATGATAAACAACAACAGCTAA
ACCACTTAAAAGATTGTAAAGCTAGTCCACTAAAAATATTTGAACCACAAATTCCAGCCCTTCTTGAAGCAATAGACAAT
GCTGACAGAGAAGGGCTCTTCACTACCAAACCTAAAGGTCCACTAGGAGGTTACATTCATCTCCAGGACCCTGAATTTGC
TTTAGCTGTTGAGGCCTGTTTAAAGGACCTCCTTCTTGCCTTTTGTTGTAACACCTTCAAAGATGAGGAAGTACTTCAGA
CACTTATGAAAAGGTTTTATCCAGTAGGCTCTCCACGACCACAGATAATTGTGTCAGCATTTAAGAATGAGATATATGAT
ATGACAAACAGAGCAGCTCATCACCCAGAGTTTCCAACAGTTCTCACAGCTTTAAAAATAGATGATGCAGTGGTGGCCAA
TGCTTTGATTGACATGAGAGGGATAGAGTCAGTGCTGCTTATTAAAAGTAACTCTTTGGCTCGTACAGTAATGCAAGTTC
AGGAACCCCCCAAGAACTGTCGTGAAGCTTTTACCGCTGATGGTGACCAGGTGTTTGAGCGACGCTATTATTCATGTGAC
AAATCAAGACCTACTTACTTGATTGATTTTGAGGTAGAAATAAATCATTTGGAGAAAGTTGTAGAAAACACAGTGGCACA
GTTGTCTGTATATCAGCAATGTGCAAATTCACTTGAAAATGATATCAGAAAGAATGAAGAAACTGTTAATAATCATCGTC
TGCATTTAAAAGAAATAGCAATTAGAGTAATAAAAATAAACATGCAAATAAAAGATCTTGAAAAAGAAGGAACCCAGTCA
ATAGGGTTCTCAACTCAGGAAAAAGTTAAAGAAATTGAAAAACAGATGGAACAGGTTGAGGAAAAGATGAAAGTTCAGAT
GGAAGAGATGAAGGACTTAAGACAAGAGATAATAGATGCTGAACAGAGACACGAAAGCATTAAGATGAAAATTCAGCAAG
TTCAGGAATTATCAGAATCTTTTAGGCAAGAACTAAGCCAGATTAATTTAGAAATGGACTCTGAAAAACGATGCCTACGA
CATTATCAAGATAGACTTAAACACCACACAAATTCTCTCCAAGTGAAAAAAGAAGAGCTGACCAAGAAAGAGAAAGAATT
AGAGAAAGAGACTGCTCAGGCCAAATACATTTGCCCAGAGCGAAAAGAAATTGAGAAATCTACTGCTGCTCTTGATAAAG
AAATTGCTTTTTTAAAACAAAAGATACAATCAGAAAACACCCGTCACAGAAGCAGAGAAGAAATAATAAGGCAGTTCCAA
CAAATAAAAGAAAGATATAATGCTCTAGATGTTAAAGTGAAGAATTTAAGAAATTGTATTAAATCACTGGATCAAACATC
AGTGCAAAGATATGAATTATACCAGCAATTTAGAAGAAGTCTTGCTTTACGATGCAGGTTGTACTTTGACAGTTTTCTAT
CTCAGTTGGCCCTCTCAGGAGAAATAAGGTTTGATCATGCACATGAAACCCTTTCTGTAAGAGTCCAGCGTGGAGAAGGA
AATACAGCTGGTTTGGGTAGCATAGAGCTGCAATCAGGGAGTGAAAACTCTTTTTCAAACTTTTTTTTCATTCTTTCTTT
ATGGTACATCACAGAGGGTCCCTTCAGATGCCTAGATGCATTTGATAGTTATTTGGACCCAAGCAGTAGAAGAATTGCCT
TAAACATGATCCTCAAGATTGCACAATCCCAGCAGTTCCGTCAGTTCATCCTACTCACTCCACAAAGCCTGAGCTTTCTT
TCGCCAAGTTCTCTGATAAAAATAATCCATGTACCTGATACTGAAAGAGAACAGAGAACCCTGCATTTTCGACGAGTTCG
TGAAGACGAGGAAGAAGATTGA

ORF - retro_mdom_42 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 53.49 %
Parental protein coverage: 98.26 %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalQEPDRASMEEDDDEPCLALSTMSA-EVGIIESIQLKNFMCHSMLGPFKFGSNVNFVVGNNGSGKSAVLTA
QE........D......A.S..S..EVGI.ESIQL.NFMCHS.LGP..FG.NVNFVVG..G..KSA.LTA
RetrocopyQEEQESLLLQDEPHGSAAASPLSVGEVGIVESIQLENFMCHSRLGPVQFGPNVNFVVGQRG--KSALLTA
ParentalLIVGLGGKATATNRGSSLKGFVKDGQSSAAVSITLRNRGEDAFKPAVYGESITVHQHISIEGSRSYKLKG
L..GLGGK......GS.LK.FVKDG..SA...ITL.NRGE.A.KP..YG.SI.VHQ.IS..G..SYKLK.
RetrocopyLLLGLGGKSL----GSPLKEFVKDGEASANILITLSNRGENAYKPDSYGDSIIVHQCISVSGTVSYKLKD
ParentalQMGNLVSSKKEELTAILDHFNIQVDNPVSVLTQEMSKQFLQSKNEGDKYKFFMKATQLEQMREDYSYIXX
Q.G....SKK.EL..IL.HFNI.VDNP...L.QEM..Q.LQ....G..YKFF.K.TQLEQM..DY..I..
RetrocopyQSGSVITSKKAELAEILEHFNIRVDNPMTILQQEMGRQLLQTRSDGERYKFFQKVTQLEQMHNDYLCILE
ParentalXXXXXXXXXXWGSQRLQELRRQCLEKEERFQSIADLSVMKRKLEELKHEMAWALVGEYEAETEEIRASIG
...........G...L.EL..Q..E.E..FQS.A........LE.LKHEMAWA.V.E.E...E.....I.
RetrocopyRKARTQDQIEQGEKQLLELKQQGIEVEQCFQSMA---ASRKRLEDLKHEMAWAVVNESERQIEDMISNIN
ParentalMGEQRTARLSQKVEAWQAKVRAAEERLKAIQDQLEHISEEAIALEPRCIHAKEDLIRRKKAYNDAEVLYN
.G.Q.T.RL.QK.EA.QAK.....E.LK..Q..L.....E.I.LE...I.A.....R.KKAY..AE.LYN
RetrocopyIGDQDTIRLNQKLEASQAKFNETTEKLKEVQEKLDKLNKETIELEIESIQARDNINRKKKAYEEAEDLYN
ParentalRCRSEHRSLAKDGEQLQARIQELKRSADPSLVPARRERNKIPALSDKAQSHEAQEELLGQELERFQQAIQ
....E...L.K..E........LK.S...S.........KI..L.........QE......LE..Q.AI.
RetrocopySSQNELKQLEKEKEHCN-QMENLKKSMEQSKL---EKQEKIAMLKEELNKYKDQENSFFEKLEHLQEAIE
ParentalKDKEERSRIMQEEADIRQVLDAKRSHLEHLRGSRSNRLKQFGSQVPALLEAIDEAYKKGQFTRKPVGPLG
KD.EE.SR...E..D..Q.L..K...L.HL.......LK.F..Q.PALLEAID.A...G.FT.KP.GPLG
RetrocopyKDNEEHSRLKREVSDVQQTLNDKQQQLNHLKDCKASPLKIFEPQIPALLEAIDNADREGLFTTKPKGPLG
ParentalACIRLRDPELALAIECCLKGLLFAFCCHNYKDERVLQGLMKSFYPPATFRPQIIVSEFRDKVYDVTHRAA
..I.L.DPE.ALA.E.CLK.LL.AFCC...KDE.VLQ.LMK.FYP....RPQIIVS.F....YD.T.RAA
RetrocopyGYIHLQDPEFALAVEACLKDLLLAFCCNTFKDEEVLQTLMKRFYPVGSPRPQIIVSAFKNEIYDMTNRAA
ParentalYHPDFPTVLTALDIDNAVVANSLIDMRRIETVLLIKSSPLARAVMQAQKPPKNCKEAFTADGDQVFERRY
.HP.FPTVLTAL.ID.AVVAN.LIDMR.IE.VLLIKS..LAR.VMQ.Q.PPKNC.EAFTADGDQVFERRY
RetrocopyHHPEFPTVLTALKIDDAVVANALIDMRGIESVLLIKSNSLARTVMQVQEPPKNCREAFTADGDQVFERRY
ParentalYSSERTRPRYLTGDVEKEISHLEKEVENKMAQLGALQQHVRSLESDLQKNQELVSSHHQHLKELKIKIKK
YS....RP.YL..D.E.EI.HLEK.VEN..AQL...QQ...SLE.D..KN.E.V..H..HLKE..I...K
RetrocopyYSCDKSRPTYLI-DFEVEINHLEKVVENTVAQLSVYQQCANSLENDIRKNEETVNNHRLHLKEIAIRVIK
ParentalILLEIKELENEEENQSVDISTLEEENEEIQKRMKEVEEKMSVQKEEMESLRKARAEAEQTYEDFKMKIHQ
I...IK.LE..E..QS...ST..E...EI.K.M..VEEKM.VQ.EEM..LR.....AEQ..E..KMKI.Q
RetrocopyINMQIKDLE-KEGTQSIGFST-QEKVKEIEKQMEQVEEKMKVQMEEMKDLRQEIIDAEQRHESIKMKIQQ
ParentalVSELAEPVKEELNEADAEVDAQKRSLRHYEDRLSQHVATVQVKKDELARTERELEEKIALAKKICPERME
V.EL.E....EL.....E.D..KR.LRHY.DRL..H....QVKK.EL...E.ELE...A.AK.ICPER.E
RetrocopyVQELSESFRQELSQINLEMDSEKRCLRHYQDRLKHHTNSLQVKKEELTKKEKELEKETAQAKYICPERKE
ParentalVKKSPSALDKEISRLRQKIQSESDSHGDKDDIIRQYKEAKDTYQDLDSKVKSLKKFIKLLEKIMAQRYST
..KS..ALDKEI..L.QKIQSE...H.....IIRQ....K..Y..LD.KVK.L...IK.L.....QRY..
RetrocopyIEKSTAALDKEIAFLKQKIQSENTRHRSREEIIRQFQQIKERYNALDVKVKNLRNCIKSLDQTSVQRYEL
ParentalYQQFRRCLTLRCKLYFDNLLSQRAYSGKMLFDHKKETLAITVQPGEGSKAAFSDMRSLSGGERSFSTVCF
YQQFRR.L.LRC.LYFD..LSQ.A.SG...FDH..ETL...VQ.GEG..A........SG.E.SFS...F
RetrocopyYQQFRRSLALRCRLYFDSFLSQLALSGEIRFDHAHETLSVRVQRGEGNTAGLGSIELQSGSENSFSNFFF
ParentalILSLWSIAESPFRCLDEFDVYMDMVNRRIAMDMILKMADSQHYRQFILLTPQNMSSLPPSRLIRILRMPD
ILSLW.I.E.PFRCLD.FD.Y.D...RRIA..MILK.A.SQ..RQFILLTPQ..S.L.PS.LI.I...PD
RetrocopyILSLWYITEGPFRCLDAFDSYLDPSSRRIALNMILKIAQSQQFRQFILLTPQSLSFLSPSSLIKIIHVPD
ParentalPDRGERGQRALPFRPVNQEEDDD
....ER.QR.L.FR.V...E..D
RetrocopyT---EREQRTLHFRRVREDEEED

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






RNA-Seq - click to see more details

(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)

Expression validation based on RNA-Seq data:
Library Retrocopy expression Parental gene expression
SRP007412_brain 0 .00 RPM 0 .00 RPM
SRP007412_cerebellum 0 .00 RPM 0 .00 RPM
SRP007412_heart 0 .00 RPM 0 .00 RPM
SRP007412_kidney 0 .00 RPM 0 .00 RPM
SRP007412_liver 0 .00 RPM 0 .00 RPM
SRP007412_testis 0 .00 RPM 0 .00 RPM

ChIP-Seq - click to see more details

Monodelphis domestica was not studied using ChIP-Seq data.

EST - click to see more details

No EST(s) were mapped for retro_mdom_42 retrocopy.

TSS - click to see more details

Monodelphis domestica was not studied using FANTOM5 data.

Lab - click to see more details

retro_mdom_42 was not experimentally validated.

Retrocopy orthology:
Monodelphis domestica does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.
Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species Parental gene accession Retrocopies number
Monodelphis domestica ENSMODG00000003893 1 retrocopy
retro_mdom_42 ,


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