RetrogeneDB ID: | retro_mdom_482 | ||
Retrocopylocation | Organism: | Opossum (Monodelphis domestica) | |
Coordinates: | 1:715660047..715660293(+) | ||
Located in intron of: | ENSMODG00000025777 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSMODG00000023045 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 76.83 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | CERPGPSLLTVIVPDVFWFHTADGKRVICPRATATEPGRDARLQVGSIVNEEPGRLAWGLLVPVYAGTNA |
CER....L..VIV.DV.WFHTADGKR.ICPRATATEPGRD.R..VG..VNEEPGRLAWG.LVPV...TNA | |
Retrocopy | CERIAILLQAVIVSDVLWFHTADGKREICPRATATEPGRDPRV*VGGPVNEEPGRLAWGMLVPV*GITNA |
Parental | LTGPAGQGDRLS |
LTGPAGQGD.LS | |
Retrocopy | LTGPAGQGDPLS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 0 .00 RPM |
SRP007412_cerebellum | 0 .00 RPM | 0 .00 RPM |
SRP007412_heart | 0 .00 RPM | 0 .00 RPM |
SRP007412_kidney | 0 .00 RPM | 0 .00 RPM |
SRP007412_liver | 0 .00 RPM | 0 .00 RPM |
SRP007412_testis | 0 .00 RPM | 0 .00 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Monodelphis domestica | ENSMODG00000023045 | 10 retrocopies |
retro_mdom_471, retro_mdom_472, retro_mdom_474, retro_mdom_478, retro_mdom_480, retro_mdom_482 , retro_mdom_484, retro_mdom_486, retro_mdom_657, retro_mdom_658,
|