>retro_mdom_821
TTAGCAAACAAAGCTGAATGCACCAAACAATGGATAGAAAAAAAAATGATGAGGCCAACAGAGATGCTGTCCAGCCAAAT
CCTAATTCTAGAATGGAAGAATTTGTTTATGAGAAATTGGATAAAAAAGCTCCAACTCGTAGAAACAACCAAGAACTCTT
GGGGCAATCCATGATTGATGCAGGGAATGAGTTTGGCACAGGAATTGCTTATGGTAATGCCCTCATCAAATGTGGAGAAA
CACATAAACGAATTGGAACTGCAGACAGAGAACTGGTTCAGACAGCTGCAATAAACTTTCCGTACTCCTTGAAGAAACTT
TATAGAAATAGATTAAAAAACAATTGCTAAAGAAAGGAAACTACTGCAAAATAAGAACCTTGATTTGGATGCGGCAAAGA
CTAGACTGAAAAAAGGCAAAAATCGCAGAGAAAAGAGCACTATCTGAACAGGAATTAAGAATAACTCGAAGTGAATTTGA
CCACCAAGCAGAGATTACCGGACTCCTTCCGGAAGGGATCAGCAGCACCTATGCACATGCACACCACCTTCACTGCCTGA
AGGACTTTGTGGAAGTCCAAATGACTTACTATGCTCAGGGCTACCAGTACATAGTGGACCGGCAAAAACAACTCAGGAGT
TTCCCATCTGTCGTTGTATGACAAATGGTCGATCTTCCACAATCTCCACGTCATCTTCTGGAGTTTTCACCTCTCTGTTG
CCTTTAACAAGTGGCACAGCTCTTATTCCTGCC
ORF - retro_mdom_821 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
74.9 % |
Parental protein coverage: |
66.49 % |
Number of stop codons detected: |
2 |
Number of frameshifts detected |
4 |
Retrocopy - Parental Gene Alignment:
Parental | LLSKAECTKQWTEKM-MRQTEVL-LQPNPNARIEEFVYEKLDRKAPTRINNQELLGQYMIDAGNDFGPGT |
| L..KAECTKQW.....MR.TE.L..QPNPN.R.EEFVYEKLD.KAPTR.NNQELLGQ.MIDAGN.FG.G. |
Retrocopy | LANKAECTKQWIXXXXMRPTEML<VQPNPNSRMEEFVYEKLDKKAPTRRNNQELLGQSMIDAGNEFGTGI |
|
Parental | AYGNALIKCGETQKRIGTADRELVQTAAINF-LTPLRNFIEGDYKTITKERKLLQNKRLDLDAAKTRL-K |
| AYGNALIKCGET.KRIGTADRELVQTAAINF..TP.RNFIE.D.KTI.KERKLLQNK.LDLDAAKTRL.K |
Retrocopy | AYGNALIKCGETHKRIGTADRELVQTAAINF>RTP*RNFIEID*KTIAKERKLLQNKNLDLDAAKTRL>K |
|
Parental | KAKIAETRALSEQELRITQSEFDRQAEITRLLLEGISST--HAHHLRCLNDFVEAQMTYYAQCYQYMLDL |
| KAKIAE.RALSEQELRIT.SEFD.QAEIT.LL.EGISST..HAHHL.CL.DFVE.QMTYYAQ.YQY..D. |
Retrocopy | KAKIAEKRALSEQELRITRSEFDHQAEITGLLPEGISSTYAHAHHLHCLKDFVEVQMTYYAQGYQYIVDR |
|
Parental | QKQLGSFPSVFV-SNNSQSST--TSMSNISTSSSGIT--TSLLPS |
| QKQL.SFPSV.V...N..SST..TS.S...TS....T..T.L.P. |
Retrocopy | QKQLRSFPSVVV<MTNGRSSTISTSSSGVFTSLLPLTSGTALIPA |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP007412_brain |
0 .00 RPM |
0 .00 RPM |
SRP007412_cerebellum |
0 .00 RPM |
0 .00 RPM |
SRP007412_heart |
0 .00 RPM |
0 .00 RPM |
SRP007412_kidney |
0 .00 RPM |
0 .00 RPM |
SRP007412_liver |
0 .00 RPM |
0 .00 RPM |
SRP007412_testis |
0 .00 RPM |
0 .00 RPM |
Monodelphis domestica was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_mdom_821 retrocopy.
Monodelphis domestica was not studied using FANTOM5 data.
retro_mdom_821 was not experimentally validated.
Retrocopy orthology:
Monodelphis domestica does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
2 parental genes, and
2 retrocopies.