RetrogeneDB ID: | retro_meug_1003 | ||
Retrocopylocation | Organism: | Wallaby (Macropus eugenii) | |
Coordinates: | Scaffold2558:54703..54961(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PDE6G | ||
Ensembl ID: | ENSMEUG00000014404 | ||
Aliases: | None | ||
Description: | phosphodiesterase 6G, cGMP-specific, rod, gamma [Source:HGNC Symbol;Acc:8789] |
Percent Identity: | 67.05 % |
Parental protein coverage: | 96.67 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | NPIMNLE-PPKPEIRSATRVVGGPVTPRKGPPKFKQRQTRQFKSKPPKKGVQGFGDDIPGMEGLGTDITV |
.P.MNLE.PP...IRS..RVVGGPVTP.KGP..FKQ.QT.QFKSK..K...QGF.DD....E.L..DITV | |
Retrocopy | SPTMNLELPPEAKIRSVIRVVGGPVTPGKGPSEFKQSQT*QFKSKSSKQDEQGFSDDTSRIESL--DITV |
Parental | ICPWEAFNHLELHELAQY |
ICPWEAF.HLEL.EL.QY | |
Retrocopy | ICPWEAFSHLELCELTQY |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Macropus eugenii | ENSMEUG00000014404 | 1 retrocopy |
retro_meug_1003 ,
|
Sarcophilus harrisii | ENSSHAG00000013112 | 1 retrocopy |