RetrogeneDB ID: retro_meug_1063

Retrocopy location

• Organism: Wallaby (Macropus eugenii)
• Coordinates: Scaffold274169:382..1029(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: CAPG
• Ensembl ID: ENSMEUG00000013559
• Aliases: None
• Description: capping protein (actin filament), gelsolin-like [Source:HGNC Symbol;Acc:1474]

Sequence

>retro_meug_1063
GCCTCCCCATTCAAGTCAACAGTGCAGTAGCCAGGCTTTCATGTGTGGAGGTGGAAAAGTTGAAGCCTATGCCTGTGCCC
CCGAGACCTGCGAGATCTTCTCCGGAGACTCCTACCTTGTCCAGCACAATGGCCCAGAAGAGCAGTACCACCTTAACCTC
TGGATTGGTCAGCAGTCCTCCTGAGATAAGCAAGGAGCCTGCACAGTATTATCTGTGCACCTCAACTCCTTGCTGGGGGA
GAGGGCAGTGCAGCACTGGGAGGTCCAGGGCAACGAGTCTGACCACTTCATGAGTTCCTTCCCTCGAGGCCTCCAGTACC
AGGAAGGAAGTATGGAGTCAGCATTTCACTGGGCCTCATCTGAAGCTCCCTCAGGTCCCATCCAGAGACTGTACCAGGTC
AAAGGGAATAAGAACATTTGAGCCACGGAATGGGTCCTGAGCTGGGAGAGCTTTAACATTGGAGACTGCTTCATTCTGGA
TTTGGGCCATACCATCTTTGTCTAGTGTGGGAGCAAATTCAACATTCTGGAATGAAACAAAGCCCAGGACCTGGCTCTGG
CCATCAGGGACAGTGAATGGCAGGAAAAGACCAAATGGAGATTGTCACCAATGGGGAAGAGCCATCAGAGATGATCAGGT
CTTGGGG

Alignment

ORF - retro_meug_1063 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 79.73 %
• Parental protein coverage: 63.93 %
• Number of stop codons detected: 5
• Number of frameshifts detected: 4

Retrocopy - Parental Gene Alignment:

Parental  ASPFESTVQEPGLHVWR-VEKLKPVPVP-PESRGIFFSGDSYLVLHNGPEEQSHLHLWIGKQSSLHEQVA
          ASPF.STVQ.PG.HVWR.VEKLKP.PVP.PE...IF.SGDSYLV.HNGPEEQ.HL.LWIG.QSS...Q.A
Retrocopy ASPFKSTVQ*PGFHVWR<VEKLKPMPVP<PETCEIF-SGDSYLVQHNGPEEQYHLNLWIGQQSS*DKQGA

Parental  HAILSVHLNSLLGERAVQHREVQGNESDRFMSYFPRGLQYQEGGVESAFHRTSSEAPSGPIQRLFQVKGK
          ...LSVHLNSLLGERAVQH.EVQGNESD.FMS.FPRGLQYQEG..ESAFH..SSEAPSGPIQRL.QVKG.
Retrocopy CTVLSVHLNSLLGERAVQHWEVQGNESDHFMSSFPRGLQYQEGSMESAFHWASSEAPSGPIQRLYQVKGN

Parental  KNIRATERALSWESFNTGDCFILDLGRTIFVWCGSKSNILERNKAQDLALAIRDSERQ-GKAQMEIVTEG
          KNI.ATE..LSWESFN.GDCFILDLG.TIFV.CGSK.NILE.NKAQDLALAIRDSE.Q.GK.QMEIVT.G
Retrocopy KNI*ATEWVLSWESFNIGDCFILDLGHTIFV*CGSKFNILE*NKAQDLALAIRDSEWQ<GKDQMEIVTNG

Parental  EEPAEMI-QILG
          EEP.EMI.Q.LG
Retrocopy EEPSEMI<QVLG

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Macropus eugenii was not studied using RNA-Seq expression data.

ChIP-Seq

Macropus eugenii was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_meug_1063 retrocopy.

TSS

Macropus eugenii was not studied using FANTOM5 data.

Lab

retro_meug_1063 was not experimentally validated.

Homology

Retrocopy orthology:

Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 5 parental genes, and 6 retrocopies.

Species	Parental gene accession	Retrocopies number
Callithrix jacchus	ENSCJAG00000019705	2 retrocopies	retro_cjac_3816, retro_cjac_459,
Macropus eugenii	ENSMEUG00000013559	1 retrocopy	retro_meug_1063 ,
Mus musculus	ENSMUSG00000056737	1 retrocopy	retro_mmus_3506,
Otolemur garnettii	ENSOGAG00000001084	1 retrocopy	retro_ogar_3277,
Rattus norvegicus	ENSRNOG00000013668	1 retrocopy	retro_rnor_840,