RetrogeneDB ID: retro_meug_1097

Retrocopy location

• Organism: Wallaby (Macropus eugenii)
• Coordinates: Scaffold28762:8277..8916(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: FRRS1L
• Ensembl ID: ENSMEUG00000010959
• Aliases: None
• Description: ferric-chelate reductase 1-like [Source:HGNC Symbol;Acc:1362]

Sequence

>retro_meug_1097
TATCCTTTCCCTACTGCTCCTCCTGTGGACCCATTTGCCAAAATCAAAGTGGAAGACTGTGGAAAGTCCAAGGGGTGATT
TAGGTCTGGGAAACCAGGAAGTGCTGCAGAAACCTGTGATTATTTCCTTAGTTACCGCATGATAGGAGCTGATGTAGAAT
TTGAGTTAGGCGCTGACACTGATGGCTGGGTGGCAGCTGGATTTTCCTCAGACAAGAAAATGGGTGGTGATGATGTCATG
GCCTGTGTCCACGACGATAATGGCAGAGTCCGCATACAACACTCTTACAATGTTGGCCAGTGAGCCAAAGAGATCCAGAG
AAACCCTGCCAGGGATGAAGAAAGCATCTTCGAAAATAATCGTGTGACCTGCAGACTTAAACGTCCCATGAATGTTCCGA
GAGATGAAACAATCGTGGATCTTCATTTGAGCTGGTATTACTTATTTGCTTGGGGACCAACAATTCAAGGATCTATAACT
CGGCATGACATGGATTCACCACCTACATCAGAGCGCGTCGTCAGTATTTACAAGTATGAAGACATTTTTATGCCATCAGC
TGCCTATCAAACCTTCTCCTCTCCATTCTGCTTGCTTCTTGTTGTTGCGCTGACCTTTTACTTATTGATGGGAACCCCC

Alignment

ORF - retro_meug_1097 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 92.96 %
• Parental protein coverage: 100.0 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  YPFPTAPPVDPFAKIKVEDCGKTKGCFRYGKPGCTAETCDYFLSYRMIGADVEFELSADTDGWVAVGFSS
          YPFPTAPPVDPFAKIKVEDCGK.KG.FR.GKPG..AETCDYFLSYRMIGADVEFEL.ADTDGWVA.GFSS
Retrocopy YPFPTAPPVDPFAKIKVEDCGKSKG*FRSGKPGSAAETCDYFLSYRMIGADVEFELGADTDGWVAAGFSS

Parental  DKKMGGDDVMACVHDDNGRVRIQHFYNVGQWAKEIQRNPARDEEGIFENNRVTCRFKRPVNVPRDETIVD
          DKKMGGDDVMACVHDDNGRVRIQH.YNVGQ.AKEIQRNPARDEE.IFENNRVTCR.KRP.NVPRDETIVD
Retrocopy DKKMGGDDVMACVHDDNGRVRIQHSYNVGQ*AKEIQRNPARDEESIFENNRVTCRLKRPMNVPRDETIVD

Parental  LHLSWYYLFAWGPAIQGSITRHDIDSPPTSERVVSIYKYEDIFMPSAAYQTFSSPFCLLLIVALTFYLLM
          LHLSWYYLFAWGP.IQGSITRHD.DSPPTSERVVSIYKYEDIFMPSAAYQTFSSPFCLLL.VALTFYLLM
Retrocopy LHLSWYYLFAWGPTIQGSITRHDMDSPPTSERVVSIYKYEDIFMPSAAYQTFSSPFCLLLVVALTFYLLM

Parental  GTP
          GTP
Retrocopy GTP

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Macropus eugenii was not studied using RNA-Seq expression data.

ChIP-Seq

Macropus eugenii was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_meug_1097 retrocopy.

TSS

Macropus eugenii was not studied using FANTOM5 data.

Lab

retro_meug_1097 was not experimentally validated.

Homology

Retrocopy orthology:

Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Macropus eugenii	ENSMEUG00000010959	1 retrocopy	retro_meug_1097 ,