RetrogeneDB ID:

retro_meug_1101

Retrocopy
location
Organism:Wallaby (Macropus eugenii)
Coordinates:Scaffold288683:1056..1239(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:CDK2AP1
Ensembl ID:ENSMEUG00000009438
Aliases:None
Description:cyclin-dependent kinase 2 associated protein 1 [Source:HGNC Symbol;Acc:14002]


Retrocopy-Parental alignment summary:






>retro_meug_1101
ATATCTTACAGGCCCAATTTGAACACCTACATGCCGCGGCAGGCTAGGAGTGTCCACTCTCCTTCCGAAAGCACAGCAGG
ATCCACCCCGTATCAACAGTTAATCAATGGCTACGGACCCCCATCTCTAGGCTATACCCAGGGTTCCGGGAGCAGCCAGG
TACCTCAAAGTAAATATGCAGAA

ORF - retro_meug_1101 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 72.31 %
Parental protein coverage: 56.52 %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalMSYKPNLNAHMPGASLNPAGSVHSPSASMAASTQYRQLINDYGPPSLGYTQGTGSSQVPQSKYAE
.SY.PNLN..MP......A.SVHSPS.S.A.ST.Y.QLIN.YGPPSLGYTQG.GSSQVPQSKYAE
RetrocopyISYRPNLNTYMP----RQARSVHSPSESTAGSTPYQQLINGYGPPSLGYTQGSGSSQVPQSKYAE

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Macropus eugenii was not studied using RNA-Seq expression data.
Macropus eugenii was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_meug_1101 retrocopy.
Macropus eugenii was not studied using FANTOM5 data.
retro_meug_1101 was not experimentally validated.

Retrocopy orthology:
Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 21 parental genes, and 62 retrocopies.

Species Parental gene accession Retrocopies number
Ailuropoda melanoleuca ENSAMEG000000151471 retrocopy
Choloepus hoffmanni ENSCHOG000000109391 retrocopy
Dasypus novemcinctus ENSDNOG0000001714521 retrocopies
Felis catus ENSFCAG000000268221 retrocopy
Homo sapiens ENSG000001113282 retrocopies
Gorilla gorilla ENSGGOG000000095671 retrocopy
Macropus eugenii ENSMEUG00000009438 12 retrocopies
Macaca mulatta ENSMMUG000000004341 retrocopy
Monodelphis domestica ENSMODG000000124512 retrocopies
Mustela putorius furoENSMPUG000000016671 retrocopy
Mus musculus ENSMUSG000000293941 retrocopy
Nomascus leucogenys ENSNLEG000000014782 retrocopies
Otolemur garnettii ENSOGAG000000248231 retrocopy
Pongo abelii ENSPPYG000000050832 retrocopies
Pan troglodytes ENSPTRG000000055963 retrocopies
Pteropus vampyrus ENSPVAG000000153021 retrocopy
Rattus norvegicus ENSRNOG000000010703 retrocopies
Sarcophilus harrisii ENSSHAG000000150091 retrocopy
Sus scrofa ENSSSCG000000097752 retrocopies
Ictidomys tridecemlineatus ENSSTOG000000164641 retrocopy
Tursiops truncatus ENSTTRG000000158812 retrocopies



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