>retro_meug_1103
AAGAGTCTGCACAATGGAGAGGAGAATGTCCGCTTGGACAGCGACGTGGGGCAGTTCGTGGCGGGGACGGAGCTGGGGCG
GCCAAGTGCTGAGTACTGGAACGGTCCGAAGGATATCCTGGAGGAAAAGCGAGCCGTTGTGGACACGGTGTGCAGACACA
ACTACGAGGTATACAAGCCCTTCACGTTGGACAGGAGAGTCCAGCCCAGAGTGACCATCTCCCCCTCCAAGACAGACGCC
CTGCAGCACCTGCTGCTCTGCTCTGTCACTGGCTTCCATCCAAGCAAGATCAAGGTCACCTGGTTCAAGAATGGGCAGGA
GGAGACAACTGGGGTCGTGTCCAGGGGAGTGATACAACATGGTGACTGGACCTACCAGACACTGGTCATGTTGGAAATGA
CTTCCCAGAGCAGAGATGTCTACACCTGCAGTGTGGAGCATGCCAGCCTACAGAGCCCCATCAGTGTGGAATGGAGGGCA
CAGTCTGAATCTGCCCAGAGCAAACTGCTGAGTGGAATTGGAGGCTTTGTCCTGGGGCTTATCTTCCTCAGTGTAGGACT
AATCATCCACCTGAAGAACAAGAAA
ORF - retro_meug_1103 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
86.15 % |
Parental protein coverage: |
89.35 % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | RDIYNGEEDVRFDSDVGQFVAVTELGRPDAEYWNGQEDSLEEYRGYVDTLCRHNYEA--TLHLDRRVQPR |
| ....NGEE.VR.DSDVGQFVA.TELGRP.AEYWNG..D.LEE.R..VDT.CRHNYE......LDRRVQPR |
Retrocopy | KSLHNGEENVRLDSDVGQFVAGTELGRPSAEYWNGPKDILEEKRAVVDTVCRHNYEVYKPFTLDRRVQPR |
|
Parental | VTISPSKTDALQHLLVCSVTGFYPSKIKVTWFKNGQEETAGIVSTGVIQHGDWTYQTLVMLEMTPQSRDV |
| VTISPSKTDALQHLL.CSVTGF.PSKIKVTWFKNGQEET.G.VS.GVIQHGDWTYQTLVMLEMT.QSRDV |
Retrocopy | VTISPSKTDALQHLLLCSVTGFHPSKIKVTWFKNGQEETTGVVSRGVIQHGDWTYQTLVMLEMTSQSRDV |
|
Parental | YTCSVEHASLQSPISVEWRAQSESAQSKLLSGIGGFVLGLIFLSVGLIIHLKNKK |
| YTCSVEHASLQSPISVEWRAQSESAQSKLLSGIGGFVLGLIFLSVGLIIHLKNKK |
Retrocopy | YTCSVEHASLQSPISVEWRAQSESAQSKLLSGIGGFVLGLIFLSVGLIIHLKNKK |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Macropus eugenii was not studied using RNA-Seq expression data.
Macropus eugenii was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_meug_1103 retrocopy.
Macropus eugenii was not studied using FANTOM5 data.
retro_meug_1103 was not experimentally validated.
Retrocopy orthology:
Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
1 parental gene, and
1 retrocopy.