RetrogeneDB ID: | retro_meug_1124 | ||
Retrocopylocation | Organism: | Wallaby (Macropus eugenii) | |
Coordinates: | Scaffold29788:16927..17651(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMEUG00000013859 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PAQR4 | ||
Ensembl ID: | ENSMEUG00000001349 | ||
Aliases: | None | ||
Description: | progestin and adipoQ receptor family member IV [Source:HGNC Symbol;Acc:26386] |
Percent Identity: | 73.98 % |
Parental protein coverage: | 97.57 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 4 |
Parental | SGPRLLDWASSPPHLQFNKFVLTGYRPASSGSGCLRSLFYLHNELGNIYTHGLALLGFLVLLPLTMPWGQ |
S...LLDWA.SP.HLQFN.FVLTGYRPASS..GC..SLFYLHNELGNIY.HG.AL...LVLLPLT.PW.Q | |
Retrocopy | SSQPLLDWANSPCHLQFNPFVLTGYRPASSALGCVHSLFYLHNELGNIYIHGMALMILLVLLPLTIPWNQ |
Parental | LGGGGWLGGTHCVACLAPPAGSVLYHLFMCHRGGSPVYARLLALDMCGVCLVNTLGALPIIHCTLVCRPW |
LG.G.WLGGTHC.ACLAP.AGSVLYHLFMCH.GGS..Y.RLL.LD.CGV.LVN.LGALP.IHCTL.C.P. | |
Retrocopy | LGWGSWLGGTHCLACLAPTAGSVLYHLFMCHHGGSRIYTRLLTLDLCGVWLVNSLGALPLIHCTLCCWPR |
Parental | LRPAALVGYTLISGLAGWRALTAPSTSARLRAFGWQAGARLLVFGARGMGLG-AAPGSLPCYLRMDALAL |
.R..AL..Y...S..AGW.ALTA.ST.ARLRAF.WQA..RLLVFG.RG.GLG..APGSL..YLRMDALAL | |
Retrocopy | CRLMALLTYGFLSSIAGWQALTAHSTMARLRAFSWQATGRLLVFGLRGLGLGTGAPGSLTYYLRMDALAL |
Parental | LGG-LVNVARL-PERWGPGR-FDYWGN-SHQIMHLL |
LG..LVNVARL.PERW.PG..FDYW...SHQIMHLL | |
Retrocopy | LGD<LVNVARL>PERWKPGA<FDYWCT<SHQIMHLL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Macropus eugenii | ENSMEUG00000001349 | 1 retrocopy |
retro_meug_1124 ,
|
Macropus eugenii | ENSMEUG00000014552 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000015439 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000016528 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000017610 | 1 retrocopy |