RetrogeneDB ID: | retro_meug_116 | ||
Retrocopylocation | Organism: | Wallaby (Macropus eugenii) | |
Coordinates: | GeneScaffold_303:7023..7371(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SPG21 | ||
Ensembl ID: | ENSMEUG00000013791 | ||
Aliases: | None | ||
Description: | spastic paraplegia 21 (autosomal recessive, Mast syndrome) [Source:HGNC Symbol;Acc:20373] |
Percent Identity: | 95.69 % |
Parental protein coverage: | 62.7 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | RVIALQYPVYWDHLEFCDGFRKLLDHLQLDKVHLFGASLGGFLAQKFAEYTHKSPRVHSLILCNSFSDTS |
RVIALQYPVYWDHLE.CDGFRKLLDHLQLDKVH..GASLGGFLAQKFAEYTHKSPRVHSLIL.NSFSDTS | |
Retrocopy | RVIALQYPVYWDHLELCDGFRKLLDHLQLDKVHPLGASLGGFLAQKFAEYTHKSPRVHSLILWNSFSDTS |
Parental | IFNQTWTANSFWLMPAFMLKKIVLGNFSSGPVDPVMADAIDFMVDR |
IFNQTWTANSFWLMPA.MLKKIVLGNFSSGPVDPVMADAIDFMVDR | |
Retrocopy | IFNQTWTANSFWLMPASMLKKIVLGNFSSGPVDPVMADAIDFMVDR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000005282 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000013791 | 1 retrocopy |
retro_meug_116 ,
|
Oryctolagus cuniculus | ENSOCUG00000016136 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000010385 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000010101 | 1 retrocopy |