RetrogeneDB ID: retro_meug_1166

Retrocopy location

• Organism: Wallaby (Macropus eugenii)
• Coordinates: Scaffold311651:900..1785(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMEUG00000011319
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMEUG00000002017
• Aliases: None
• Description: None

Sequence

>retro_meug_1166
AAAGACTTTCTAGCTACAGCCAAGGAAGAGTTCCTCAAGAGATGGGAAAACCCGCCTCAGCCAAGTACAGTCCAGCTGGA
CCAGTTTGACAGGCTCAAGACTCTGGGCACCGGTTCGTTTGGCCGAGTGATTCTGGTGAAGCACCGGGAGAGCGGGGACT
ACTTTGCCATGAAAGTCCTGGACAAGCAGAAGATTGTGAAGCTGAAACAGATCGAGCACACCATGAACGAGAAGTGCATC
CTGCAGGCCATCAACTTCCCATTCCTGGTCCGACTGCAGTACACCTTCAAGGACAACACCAACCTGTACATGGTCATGGA
GTATGTCTCCGGTGGGGAGATGTTCTTCCACCTACGGCGGATCGGAAGGTTCAGCGAGCCCCATGGTCGCTTCTACGCTG
CTCAGATCGTCCTCAGCTTCGAGTACCTGCACTCGCTGGACCTCATCTACCGAGACCTGAAGCCGGAGAACCTTCTCATT
GATCAACAGGGCTACGTCCAGGTGGCGGATTTTGGTTTTGCCAAGCGCGTGAAAGGCCGAACCTGGACTTTGTGTGGGAC
TCCCGAGTACCTGGCCCCTGAGATCATCCTTAGCAAGGGCTACAACAAGGCTGTGGACTGGTGGGCTCTAGGGGTGCTGA
TCTATGAGATGGCAGCAGGTTACCCCCCCTTCTATGCCACCCGGCCCATCCAGATCTATGAAAACATTATCTCTGGCAAG
TTCCGATTCCCTTCTCACTTCAGCTCCGACTTAAGGGACCTGCTTCGGAAACTGCTCCAAGTGGACCTCAGCAAGCGCTA
CGGGAACCTCAAGAATGGTGTGAATGACATCAAGAACCACAAATGGTTCTCCGCCACTAACTGGATCGCCATCTACCAGA
GGAAG

Alignment

ORF - retro_meug_1166 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 89.83 %
• Parental protein coverage: 100. %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  KEFLAKAKEEFLKKWESPPQ-STVQLDQFDRIKTLGTGSFGRVILVKHRETGNYFAMKVLDKQKVVKLKQ
          K.FLA.AKEEFLK.WE.PPQ.STVQLDQFDR.KTLGTGSFGRVILVKHRE.G.YFAMKVLDKQK.VKLKQ
Retrocopy KDFLATAKEEFLKRWENPPQPSTVQLDQFDRLKTLGTGSFGRVILVKHRESGDYFAMKVLDKQKIVKLKQ

Parental  IEHTMNEKRILQAINFPFLVRLEYSFKDNTNLYMVMEYVPGGEMFSHLRRIGRFSEPHARFYAAQIVLTF
          IEHTMNEK.ILQAINFPFLVRL.Y.FKDNTNLYMVMEYV.GGEMF.HLRRIGRFSEPH.RFYAAQIVL.F
Retrocopy IEHTMNEKCILQAINFPFLVRLQYTFKDNTNLYMVMEYVSGGEMFFHLRRIGRFSEPHGRFYAAQIVLSF

Parental  EYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGRTWTLCGTPEYLAPEIILSKGYNKAVDWWAL
          EYLHSLDLIYRDLKPENLLIDQQGY.QV.DFGFAKRVKGRTWTLCGTPEYLAPEIILSKGYNKAVDWWAL
Retrocopy EYLHSLDLIYRDLKPENLLIDQQGYVQVADFGFAKRVKGRTWTLCGTPEYLAPEIILSKGYNKAVDWWAL

Parental  GVLIYEMAAGYPPFFADQPIQIYEKIVSGKVRFPSHFSSDLKDLLRNLLQVDLTKRYGNLKNGVNDIKNH
          GVLIYEMAAGYPPF.A..PIQIYE.I.SGK.RFPSHFSSDL.DLLR.LLQVDL.KRYGNLKNGVNDIKNH
Retrocopy GVLIYEMAAGYPPFYATRPIQIYENIISGKFRFPSHFSSDLRDLLRKLLQVDLSKRYGNLKNGVNDIKNH

Parental  KWFATTDWIAIYQRK
          KWF..T.WIAIYQRK
Retrocopy KWFSATNWIAIYQRK

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Macropus eugenii was not studied using RNA-Seq expression data.

ChIP-Seq

Macropus eugenii was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_meug_1166 retrocopy.

TSS

Macropus eugenii was not studied using FANTOM5 data.

Lab

retro_meug_1166 was not experimentally validated.

Homology

Retrocopy orthology:

Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 6 parental genes, and 8 retrocopies.

Species	Parental gene accession	Retrocopies number
Homo sapiens	ENSG00000072062	1 retrocopy	retro_hsap_46,
Gorilla gorilla	ENSGGOG00000013294	1 retrocopy	retro_ggor_2856,
Macropus eugenii	ENSMEUG00000002017	2 retrocopies	retro_meug_10, retro_meug_1166 ,
Monodelphis domestica	ENSMODG00000012087	1 retrocopy	retro_mdom_1978,
Pan troglodytes	ENSPTRG00000010585	1 retrocopy	retro_ptro_80,
Sarcophilus harrisii	ENSSHAG00000009246	2 retrocopies	retro_shar_13, retro_shar_49,