RetrogeneDB ID: retro_meug_1177

Retrocopy location

• Organism: Wallaby (Macropus eugenii)
• Coordinates: Scaffold31581:13734..14787(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMEUG00000011753
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: ADRM1
• Ensembl ID: ENSMEUG00000009124
• Aliases: None
• Description: adhesion regulating molecule 1 [Source:HGNC Symbol;Acc:15759]

Sequence

>retro_meug_1177
ATTCATTTGTGTTGGAAGGATAGGACTTCTGGGAATGTAGAAGATGACTTAATTATTTTTCCTGATGACTGTGAATTTAA
GAGAGTACCTCAGTGCACTACTGGTAGAGTATATGTACTAAAATTCAAGGCAGGATCAAAGCAACTCTTCTTTTGGATGC
AGGAGCCTAAGACTGAGAAGGATGAAGAACATTGCAGGAAAGTAAATGAATATTTGAATAATCCACCTATGCCAGGAGCT
CTGGGTGCAAGTGGAAGTGGAGGCCATGAACTTTCAGCACTTGGAGGTGAAGGTGGTTTGCAGAGCCTTCTGGGTAACAT
GAGTCATAACCAGCTTATGGAACTTATTGGACCAACTGGCTTGGGAGGACTTGGTGGGCTTGGTGCACTGACAGGTCCAG
GTCTGGCTAGCTTACTGGGGAGTGGAGGGCCTCCAACGAGCAGCTCTTTGTCAAGCTCCCGGAGCCAGTCAGCTTCTGTA
ACCCCATCTTCCACCTCTTCTTCTGCTCATGCTACACGAGCACCCAGTGCTCAAGCAATTGCCTCTGCAACTAGTCCAAG
CCCTGCACCAAGTTCAGGTAATGGAACCAGCACAGCAACAAGCCCAACCCAGCCCATTCAACTGACTGACCTTCAGAACA
TTTTAGCTACTATGAATGTGCCATCTGGGGCAGGAGGCAGACAGCAAGTTGACTTGGCCAGTGTACTAACTCCAGAGATC
ATGGCTCCTATTCTGGCCAATGCTGAAGTCCAAGAGCAATTGCTGCCTTATCTTCCCTCTGGAGAATCTCTTCCACAGAC
TGCAGAAGAGATTCAGAACACATTGACCTCTCCTCAGTTTCAGCAGGCTTTAAGTATGTTCAGTGCTGCCTTAGCCTCAG
GACAGCTGGGCCCACTTATGAGTCAGTTTGGTTTACCAACTGAAGCTGTAGATGCAGCAAATAAGGGTGATGTTGAAGCA
TTTGCCAAAGCCATGCAGAACAATGCCAAGTCAGACCAAAAGGAAGGAGATGCAAAGGACAAGAAAGACGAAGAGGAAGA
CATGAGTTTAGAT

Alignment

ORF - retro_meug_1177 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 97.15 %
• Parental protein coverage: 100.0 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  IHFCWKDRTSGNVEDDLIIFPDDCEFKRVPQCTTGRVYVLKFKAGSKRLFFWMQEPKTEKDEEHCRKVNE
          IH.CWKDRTSGNVEDDLIIFPDDCEFKRVPQCTTGRVYVLKFKAGSK.LFFWMQEPKTEKDEEHCRKVNE
Retrocopy IHLCWKDRTSGNVEDDLIIFPDDCEFKRVPQCTTGRVYVLKFKAGSKQLFFWMQEPKTEKDEEHCRKVNE

Parental  YLNNPPMPGALGASGSGGHELSALGGEGGLQSLLGNMSHNQLMQLIGPT-LGGLGGLGALTGPGLASLLG
          YLNNPPMPGALGASGSGGHELSALGGEGGLQSLLGNMSHNQLM.LIGPT.LGGLGGLGALTGPGLASLLG
Retrocopy YLNNPPMPGALGASGSGGHELSALGGEGGLQSLLGNMSHNQLMELIGPTGLGGLGGLGALTGPGLASLLG

Parental  SGGPPTSSSSSSSRSQSASVTPSSTSSSARATPAPSAQAIASATSPSPAPSSGNGTSTATSPTQPIQLSD
          SGGPPTSSS.SSSRSQSASVTPSSTSSSA.AT.APSAQAIASATSPSPAPSSGNGTSTATSPTQPIQL.D
Retrocopy SGGPPTSSSLSSSRSQSASVTPSSTSSSAHATRAPSAQAIASATSPSPAPSSGNGTSTATSPTQPIQLTD

Parental  LQNILATMNVPSGAGGGQQVDLASVLTPEIMAPILANAEVQERLLPYLPSGESLPQTAEEIQNTLTSPQF
          LQNILATMNVPSGAGG.QQVDLASVLTPEIMAPILANAEVQE.LLPYLPSGESLPQTAEEIQNTLTSPQF
Retrocopy LQNILATMNVPSGAGGRQQVDLASVLTPEIMAPILANAEVQEQLLPYLPSGESLPQTAEEIQNTLTSPQF

Parental  QQALSMFSAALASGQLGPLMSQFGLPTEAVDAANKGDVEAFAKAMQNNAKSDQKEGDAKDKKDEEEDMSL
          QQALSMFSAALASGQLGPLMSQFGLPTEAVDAANKGDVEAFAKAMQNNAKSDQKEGDAKDKKDEEEDMSL
Retrocopy QQALSMFSAALASGQLGPLMSQFGLPTEAVDAANKGDVEAFAKAMQNNAKSDQKEGDAKDKKDEEEDMSL

Parental  D
          D
Retrocopy D

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Macropus eugenii was not studied using RNA-Seq expression data.

ChIP-Seq

Macropus eugenii was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_meug_1177 retrocopy.

TSS

Macropus eugenii was not studied using FANTOM5 data.

Lab

retro_meug_1177 was not experimentally validated.

Homology

Retrocopy orthology:

Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Macropus eugenii	ENSMEUG00000009124	1 retrocopy	retro_meug_1177 ,
Myotis lucifugus	ENSMLUG00000000322	1 retrocopy	retro_mluc_1210,