>retro_meug_1233
GAGGATGTCTTGGATGTATATATTGAACACCGGCTCATGATGGAGCAACGAAGCCAGGACCCTGGAGCCATCCATAGCCC
TCAGAATCAGTATCCCTCTGAGCTCATGTGGAGATTTGAACTATACTTTCTGAGCCCAAGAAGCAGCAAACCACGGGTGA
TTCGAGAAGTACGTGCTGATGCAATAGGAAAGTTGGTTACTGTGCGTGGGATTGTGACTCGTGTCTCTGAGGTCAAGCCT
AGGATGGTAGTGGCAACATACACCTGTGACCAGTGTGGAGCTGAGACCTATCAGCTGATTCGGTCTCCTGTTTTCATGCC
ACTAATTACGTGCCCAAGCCAAGAGTGTCGGACCAATCGCTCAGGAGGACGGCTCTACTTACAGACACGTGGTTCCAAAG
TCATTAAGTTCCAAGAGTTAAAAATGCAAGAACAGGGTGACCAAGTGCCACTGGGAAACATCCCACGAAGTATCACAGTG
TTGGTAGAAGGAGAGAACACACTGTTGGCCCAGCCAGGTGACCACGTCAGTATCACTGGCATATTCCTGCCAATGCTGCA
TACGGGATTCCGACAGGTGATGCAGGGCCTGCTATCAAAAACTTATTTGGAAGCCCACTGGATTGTGAAGATGAATAAGA
GCGAAGATGATGAAGCTGGGATTGGAGAGCTGAGCAAAGAGGAGATGAGACAGATTGCAGAAGATTTCTATGAAAAACTG
GCAGCCTCAATTGCTCCTGAGATATATGGACATGAAGATGTAAAGAAGGCTCTGCTTCTCTTGTTGGTTGGTGGGGTGGA
TCAGTCCCCTCGGGGAATGAAGATCAGAGGAAACATTAATATTTGCTTGATGGGGGATCCTGGTGTGGCCAAGTCTCAAC
TTCTATCTTATATTGATCGTCTGACCCCTCAAAGCCAGTATACAACAGGTCGAGGGTCATCAGGTGTGGGACTAACCACA
GCAGTGCTTCGGGATGCAGTGAGCAGGGAGCTGACCTTGGAGGGAGGTGCGCTGGTACTAGCTGACCAGGGTGTATGCTG
TATTGATGAGTTTGACAAGATGGCAGAGGCTGATCACACAACAATCCATGAAGTGATGGAGCAGCAAACTATTTCTACAG
CAAAAGCAAGCATTCTTACCACACTTAATGCTCCATGCTCCATCTTGGCTGCCTCTAACCCTGCTTATTGACGATATAAT
CCTCGTCGCAGCCTGGAACAGAATGTACAGTTCCTGCTGCT
ORF - retro_meug_1233 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
91.59 % |
Parental protein coverage: |
57.64 % |
Number of stop codons detected: |
1 |
Number of frameshifts detected |
1 |
Retrocopy - Parental Gene Alignment:
Parental | KDVLDVYIEHRLMMEQRSQDPGAIRSPQNQYPSELMCRFELYFRSPSSSKPRVIREVRADSIGKLVTVRG |
| .DVLDVYIEHRLMMEQRSQDPGAI.SPQNQYPSELM.RFELYF.SP.SSKPRVIREVRAD.IGKLVTVRG |
Retrocopy | EDVLDVYIEHRLMMEQRSQDPGAIHSPQNQYPSELMWRFELYFLSPRSSKPRVIREVRADAIGKLVTVRG |
|
Parental | IVTRISEVKHRMVVATYTCDQCGAETYQPIRSPVFMPLIMCPSQECQTNRSGGRLYLQTRGSKFIKFQEL |
| IVTR.SEVK.RMVVATYTCDQCGAETYQ.IRSPVFMPLI.CPSQEC.TNRSGGRLYLQTRGSK.IKFQEL |
Retrocopy | IVTRVSEVKPRMVVATYTCDQCGAETYQLIRSPVFMPLITCPSQECRTNRSGGRLYLQTRGSKVIKFQEL |
|
Parental | KMQEHSDQVPVGNIPRSITVLVEGENTRLAQPGDHVSITGIFLPMLRTGFRQVVQGLLSETYLEAHRIVK |
| KMQE..DQVP.GNIPRSITVLVEGENT.LAQPGDHVSITGIFLPML.TGFRQV.QGLLS.TYLEAH.IVK |
Retrocopy | KMQEQGDQVPLGNIPRSITVLVEGENTLLAQPGDHVSITGIFLPMLHTGFRQVMQGLLSKTYLEAHWIVK |
|
Parental | MNKSEDDEAGIGELSKEELRQIAEEDFYEKLAASIAPEIYGHEDVKKALLLLLVGGVDQSPRGMKIRGNI |
| MNKSEDDEAGIGELSKEE.RQIA.EDFYEKLAASIAPEIYGHEDVKKALLLLLVGGVDQSPRGMKIRGNI |
Retrocopy | MNKSEDDEAGIGELSKEEMRQIA-EDFYEKLAASIAPEIYGHEDVKKALLLLLVGGVDQSPRGMKIRGNI |
|
Parental | NICLMGDPGVAKSQLLSYIDRLAPRSQYTTGRGSSGVGLTAAVLRDAVSGELTLEGGALVLADQGVCCID |
| NICLMGDPGVAKSQLLSYIDRL.P.SQYTTGRGSSGVGLT.AVLRDAVS.ELTLEGGALVLADQGVCCID |
Retrocopy | NICLMGDPGVAKSQLLSYIDRLTPQSQYTTGRGSSGVGLTTAVLRDAVSRELTLEGGALVLADQGVCCID |
|
Parental | EFDKMAEADRTAIHEVMEQQTISIAKAGILTTLNARCSILAAANPAYGRYNPRRSLEQNVQ-LPAA |
| EFDKMAEAD.T.IHEVMEQQTIS.AKA.ILTTLNA.CSILAA.NPAY.RYNPRRSLEQNVQ..PAA |
Retrocopy | EFDKMAEADHTTIHEVMEQQTISTAKASILTTLNAPCSILAASNPAY*RYNPRRSLEQNVQ<VPAA |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Macropus eugenii was not studied using RNA-Seq expression data.
Macropus eugenii was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_meug_1233 retrocopy.
Macropus eugenii was not studied using FANTOM5 data.
retro_meug_1233 was not experimentally validated.
Retrocopy orthology:
Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
3 parental genes, and
3 retrocopies.