RetrogeneDB ID: | retro_meug_1235 | ||
Retrocopylocation | Organism: | Wallaby (Macropus eugenii) | |
Coordinates: | Scaffold336437:66..575(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PSMB2 | ||
Ensembl ID: | ENSMEUG00000000421 | ||
Aliases: | None | ||
Description: | proteasome (prosome, macropain) subunit, beta type, 2 [Source:HGNC Symbol;Acc:9539] |
Percent Identity: | 63.95 % |
Parental protein coverage: | 85.86 % |
Number of stop codons detected: | 5 |
Number of frameshifts detected | 1 |
Parental | CP-SAAMEYLIGIQGPDYILVASDRVAASNIVQMKDXHDKMFKMSEKILLLC-VGEAGDTVQFAEYIQKN |
CP.S.A.EYLIGIQGP.YILV....VA.SN..Q.K...D......E....LC......DTVQFAEYIQKN | |
Retrocopy | CPTSLATEYLIGIQGPGYILVTLNCVATSNFIQ-KGNYDYA*NEGEDLTSLC<LESLRDTVQFAEYIQKN |
Parental | VQLYKMRNGYELSPTAAANFTRRNLADYLRSRTPYHVNLLLSGYDEHEGPALYYMSYLAALAKAPFAAHG |
V.LYKM...YELSPTA.ANFT..NL.DY..S.TP.HV.LLL.GYDEHEGP.L..M..L...AK..FAAH. | |
Retrocopy | VELYKMCSDYELSPTATANFTHQNLDDYFQSQTPNHVSLLLAGYDEHEGP*L**MG*LEVQAKVSFAAHN |
Parental | YGAFLTLSILDHYYKPSITREEAVELLKKCLE |
Y..FLTLSILDHY.KPSIT.E.AVELLK.CLE | |
Retrocopy | YCVFLTLSILDHYCKPSITHEYAVELLKNCLE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000000715 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000003543 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000001547 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000017663 | 1 retrocopy | |
Equus caballus | ENSECAG00000021615 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000019511 | 1 retrocopy | |
Felis catus | ENSFCAG00000030845 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000000421 | 1 retrocopy |
retro_meug_1235 ,
|
Monodelphis domestica | ENSMODG00000017902 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000014891 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000012259 | 2 retrocopies | |
Pteropus vampyrus | ENSPVAG00000001871 | 1 retrocopy | |
Sorex araneus | ENSSARG00000000409 | 2 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000016996 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000005230 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000005648 | 2 retrocopies |