RetrogeneDB ID: | retro_meug_1315 | ||
Retrocopylocation | Organism: | Wallaby (Macropus eugenii) | |
Coordinates: | Scaffold36611:16980..17425(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | EFHD1 | ||
Ensembl ID: | ENSMEUG00000008640 | ||
Aliases: | None | ||
Description: | EF-hand domain family, member D1 [Source:HGNC Symbol;Acc:29556] |
Percent Identity: | 55.84 % |
Parental protein coverage: | 84.83 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | PRPTKVFKPYTEFPEFSRRQIKDMESLFRRYDSGKDGYIDLMELKLMMEKLGAPQTHLGLKNMIKEVDED |
P.P.KVFKPY...PEF....IKD.ESLF..YD.GK.GYI.LMELKL.MEKLG.P.THLGLKNM.KEVDE. | |
Retrocopy | PWPAKVFKPYIKIPEFWH--IKDRESLFQQYDHGKGGYINLMELKLVMEKLGSP*THLGLKNMSKEVDEN |
Parental | LD-SKLSFRELIFSRGALGVEEDSSLMALTKFPKTHVGPE-CTWVQNISEA-VHALSVTSRFEAEIKAEQ |
LD.....F..L....G..G......LM.L.K.....V.........N..EA.VHALS.TSRFE.EIKAE. | |
Retrocopy | LD>DSRAFEFLLIPEGTGGGQQ---LMSLAKLSEVNVAIKGVKGAKNFFEAKVHALSLTSRFEPEIKAEE |
Parental | MARKQEEEERRHRQ |
M..K.E.EE.R..Q | |
Retrocopy | MS*KPEKEEERKHQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000003684 | 1 retrocopy | |
Equus caballus | ENSECAG00000024045 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000008640 | 1 retrocopy |
retro_meug_1315 ,
|
Monodelphis domestica | ENSMODG00000010573 | 2 retrocopies |