>retro_meug_1331
GAGGATGACTTGCTCACCCTGTCAGCTGTCTACCCTGAGGAAAAACAAGACAGCCAAACAGGCATGGCCAACCGCTACAA
GGAGCCTTTCAATAATCCCCTAAAGCACTGGCTACTGATATACTTGTGGCACTGGGTAGAGCAGGATGATAGTGCCTTGG
CCAAGAGGCGCTTCTTCTAGTATTTTAACTAACTATGATAGCTGGGCATATGGAAGATGCAGCTTCTAAATGAAAATCAC
CTCTTTATCAAGTACACTAGTGAGGATGTAGTGATACTATGGGTCACAGAACCATCACAGCTTTCCTCTTTGTTTTGTAC
AATATGGTAATGGCAGAGGTGAAAGTAGTGTTTGAGAATTCTTAGGATGAATTTCTGGAGCTCTTTGAGAATTTCTGTGA
CCTCTTCCACAACTCTACCCTGCACAGTGAGGCTGTCCAGTTTTCCTGTTTAGCTTTTATCAACAAATTTGCCAGGCAGA
TCCAGTGCCAATTTAAAGACACTATTGTAAATGCAAAGTATGGAGGGCACACAGAGGCAGTATGGCGGCTGCTTGGTCAG
CTCCCCATCAGCGCCCAGTCATGCAGTGGCAGTCCCCACCTTGATCTACCTCCTCTGCTATGATGATAAGCAGGTTTCAT
TTATGGAGCCCCCCCAAGACTTGTGGAGATCACCCAATCAGGTTCTATGCCTAGGATTCTGGTCTGCTCAAGTTTGAGAT
CCAGACAGGCCTCCTGGGCCACCCCATCAGCCACACAATCTGCCACTTGGTCACCTTCACCTTCCACCCTTTTGAGCCTT
TTGCCATCTCAGTGCAGAGCAGTAATGACAAATGAGTGGTGAACTTCCATATGCGGCACAGTTGCACA
ORF - retro_meug_1331 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
73.04 % |
Parental protein coverage: |
52.63 % |
Number of stop codons detected: |
7 |
Number of frameshifts detected |
3 |
Retrocopy - Parental Gene Alignment:
Parental | EDDLLTLSAVYPEVQRDSQTGMANPYKEPFINSLKHRLLVYLWRRAEQDGSAMAKRRFFQYFDQLRQLRM |
| EDDLLTLSAVYPE...DSQTGMAN.YKEPF.N.LKH.LL.YLW...EQD.SA.AKRRFF.YF..L..L.. |
Retrocopy | EDDLLTLSAVYPEEKQDSQTGMANRYKEPFNNPLKHWLLIYLWHWVEQDDSALAKRRFF*YFN*L**LGI |
|
Parental | WKMQLLDENHLFIKYTSEDVVTLRVTDPSQPS-FFVVYNMVTTEVIAVFENTSDELLELFENFCDLFRNA |
| WKMQLL.ENHLFIKYTSEDVV.L.VT.PSQ.S..FV.YNMV..EV..VFEN..DE.LELFENFCDLF.N. |
Retrocopy | WKMQLLNENHLFIKYTSEDVVILWVTEPSQLS<LFVLYNMVMAEVKVVFENS*DEFLELFENFCDLFHNS |
|
Parental | TLHSEAVQFPCSASSNNFARQIQRRXXXXXXXXKYGGHTEAVQRLLGQLPISAQSYSGS-PYLDLSLFSY |
| TLHSEAVQF.C.A..N.FARQIQ..........KYGGHTEAV.RLLGQLPISAQS.SGS.P.L...L..Y |
Retrocopy | TLHSEAVQFSCLAFINKFARQIQCQFKDTIVNAKYGGHTEAVWRLLGQLPISAQSCSGS>PTL-IYLLCY |
|
Parental | DDKWVSVMER-PKTCGDHPIRFYARDSGLLKFEIQAGLLGRPINHTVLRLVAFTLHPFEPFAISVQRTNA |
| DDK.VS.ME..PKTCGDHPIRFYA.DSGLLKFEIQ.GLLG.PI.HT...LV.FT.HPFEPFAISVQ..N. |
Retrocopy | DDKQVSFMEP>PKTCGDHPIRFYA*DSGLLKFEIQTGLLGHPISHTICHLVTFTFHPFEPFAISVQSSND |
|
Parental | EYVVNFHMRHSCT |
| ..VVNFHMRHSCT |
Retrocopy | K*VVNFHMRHSCT |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Macropus eugenii was not studied using RNA-Seq expression data.
Macropus eugenii was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_meug_1331 retrocopy.
Macropus eugenii was not studied using FANTOM5 data.
retro_meug_1331 was not experimentally validated.
Retrocopy orthology:
Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
2 parental genes, and
2 retrocopies.