RetrogeneDB ID: retro_meug_1360

Retrocopy location

• Organism: Wallaby (Macropus eugenii)
• Coordinates: Scaffold38126:13584..14304(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMEUG00000009575
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMEUG00000007309
• Aliases: None
• Description: None

Sequence

>retro_meug_1360
AACAACTCAACATTTTTTTCAATATCTTCCTCTGACCTTGTCTCCAAGTGGCTAGGTGAAAGTGAAAAGCTAGTTAAGAA
TTTATTTCAGCTCGGCAGACAGAACAAGGCTTCCATTATCTTCATTGATGAAATTGATTCTCTGTGGGGCTCCAGAAGTG
AAAATGAAAGTGAAAACTGCCTGGCAAATTAAAACAAAATTCCTACTTCAAATGCAAGGGGTTGGTGTGGACGATGGAAT
TTTGGTACCTGGGATCTACAAATATACCCTGGGTTCTGGATTCTGCTGTCAGGCGAAGATTTGAGAAGTGTATTTATATT
CCTTTACCTGAATATCATGCCAGGGCAGCAATGTTTCAATTACATTTGGGGACCATACAGAACAATGGATCAGAAGCAGA
CTTCCGAGAACTGGGGAAGAAGACAGAATGGCTATTCAGGAGCTGACATCAGCATCATTGTGTGAGTTGCCCTCATGCAA
CCTGTGAGGAAAGTTCACTCAGCAACTTATTTCAAAAGAGTTAGAGGTCCTTCACCTACTAATCCTAATGTCAAAGTAGA
AGATTTACTTACTCCATGCTTTACAGGTGATCCTGGTGCCATTGAAATGACATGGATGGATGTCTCTGGTGACAAACTTT
TGGGGCCCTGTGTTTCCATGCCTGACATGTCATGGTCATTAGCTAGCACAAAAACAACTGTTAATGAACATGGCTTGCTG

Alignment

ORF - retro_meug_1360 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 69.55 %
• Parental protein coverage: 55.81 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 3

Retrocopy - Parental Gene Alignment:

Parental  NNSTFFSVSSSDLMSKWLGESEKLVKNLFELARQHKPSIIFIDEVDSLCGSRNENESE-AARRIKTEFLV
          NNSTFFS.SSSDL.SKWLGESEKLVKNLF.L.RQ.K.SIIFIDE.DSL.GSR.ENESE..A..IKT.FL.
Retrocopy NNSTFFSISSSDLVSKWLGESEKLVKNLFQLGRQNKASIIFIDEIDSLWGSRSENESE>TAWQIKTKFLL

Parental  QMQGVGNNNDGTLV-LGATNIPWVLDXXXXXXFEKRIYIPLPEEAARTQMFRLHLGNTPHSLTEANILEL
          QMQGVG...DG.LV.LG.TNIPWVLD......FEK.IYIPLPE..AR..MF.LHLG.......EA...EL
Retrocopy QMQGVGVD-DGILV>LGSTNIPWVLDSAVRRRFEKCIYIPLPEYHARAAMFQLHLGTIQNNGSEADFREL

Parental  ARKTD-GYSGADISIIVRDSLMQPVRKVQSATHFKKVRGPSRTNPGVMIDDLLTPCSPGDPGAIEMTWMD
          ..KT..GYSGADISIIV...LMQPVRKV.SAT.FK.VRGPS.TNP.V...DLLTPC..GDPGAIEMTWMD
Retrocopy GKKTE>GYSGADISIIV*VALMQPVRKVHSATYFKRVRGPSPTNPNVKVEDLLTPCFTGDPGAIEMTWMD

Parental  VPSDKLLEPVVCMSDMLRSLATTRPTVNAEDLL
          V..DKLL.P.V.M.DM..SLA.T..TVN...LL
Retrocopy VSGDKLLGPCVSMPDMSWSLASTKTTVNEHGLL

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Macropus eugenii was not studied using RNA-Seq expression data.

ChIP-Seq

Macropus eugenii was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_meug_1360 retrocopy.

TSS

Macropus eugenii was not studied using FANTOM5 data.

Lab

retro_meug_1360 was not experimentally validated.

Homology

Retrocopy orthology:

Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 5 parental genes, and 6 retrocopies.

Species	Parental gene accession	Retrocopies number
Macropus eugenii	ENSMEUG00000007309	1 retrocopy	retro_meug_1360 ,
Myotis lucifugus	ENSMLUG00000006550	2 retrocopies	retro_mluc_2432, retro_mluc_2513,
Mus musculus	ENSMUSG00000031913	1 retrocopy	retro_mmus_1038,
Otolemur garnettii	ENSOGAG00000016975	1 retrocopy	retro_ogar_391,
Tarsius syrichta	ENSTSYG00000012535	1 retrocopy	retro_tsyr_1246,