RetrogeneDB ID: | retro_meug_1397 | ||
Retrocopylocation | Organism: | Wallaby (Macropus eugenii) | |
Coordinates: | Scaffold39002:11192..12668(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TKT | ||
Ensembl ID: | ENSMEUG00000005312 | ||
Aliases: | None | ||
Description: | transketolase [Source:HGNC Symbol;Acc:11834] |
Percent Identity: | 65.41 % |
Parental protein coverage: | 86.46 % |
Number of stop codons detected: | 6 |
Number of frameshifts detected | 3 |
Parental | KQAFKDVATGSLGQGLGAPCGISYT-GKYFDKARYRVYCL-LGYGEVSEGSMWEAMVFSGFYKLDNLVAI |
K.AF.DV.TGSLGQGLGA.CG..Y..G.YF.KA.Y.VYCL.LG.GEVSEGSM..AMVF.GFY.LD..VAI | |
Retrocopy | K*AFRDVVTGSLGQGLGAVCGMDYN>GAYFYKASYHVYCL>LGNGEVSEGSM*QAMVFAGFYMLD-MVAI |
Parental | FDINQLGQSDPGP-LQHHMEVYLKRCDSFRWNIMVVDGHSVEELCKVFNQGKGKPLAVIAKTHKNRGISS |
FD...LGQ..P.P.L.H..E...K.C.SF.WN..VV.GH.VEEL..VFN.GK.KPLAVIAK..K.RGIS. | |
Retrocopy | FDF-RLGQR-PSP>LWHNLEMHQK*CESFGWNVTVVNGHRVEEL*NVFNKGKDKPLAVIAKAYKDRGISG |
Parental | VEDREAWHGKPFPKNIAEQVIEEIYS-IQSKKKILATLPKEDAPTVNIANIWMPSPPNFKL-GDKLATCK |
VED.EAWHGK....N..EQ.I.EIYS.IQSKKKILATLPKEDAPTVNI..IW.PSP.NF.L...KL.T.K | |
Retrocopy | VEDKEAWHGKLLLQNMEEQFIKEIYSQIQSKKKILATLPKEDAPTVNITKIWVPSPSNFTLFREKLDTRK |
Parental | AYGMSLAKLGHASDCVIALNGDTKNSTFSEFFKKEYPNHFIECFIAEQNMVSTAVGCATWNKTVPFSTFA |
AYGM.L.KLGHA.D.VIA...D.KNSTFSE.FKKE.PNHFIECF.AEQNMV...VGC.TW..T.P..... | |
Retrocopy | AYGMMLVKLGHATDHVIAVDEDIKNSTFSELFKKECPNHFIECFFAEQNMVIITVGCTTWGRTIP----V |
Parental | AFFTRAFDQIPLAVISESKINLCGSHCRVSIGEDGLSQMVLEDLAMFWSIPNGTGFYLSDAVAIEKANEL |
AFF.RAF..I..A.I..S.INLCGSHC..SI.EDG..QM.LEDLAMFW.IPNGT.FYLSDAVA.EK..EL | |
Retrocopy | AFFRRAFN*IHMAAIYDSNINLCGSHCGLSISEDGPPQMALEDLAMFWNIPNGTVFYLSDAVATEKMVEL |
Parental | AANTKDICFIRNSCPDNAVIYNNNYNFQIGQAKVVLKSKDDQVTLIGSGVTLHEAFAPAEQLKKEKINIR |
AANTK...FIR.S..DNA.IY.NN..FQI.Q.K.VLKSKD..V..IG...TLHEA.A.AE.L.KE.INI. | |
Retrocopy | AANTKGTSFIRTSYSDNAIIYKNNKHFQIDQVKMVLKSKDNKV--IGAEMTLHEALAAAELLRKENINIW |
Parental | VLHLFTIKPLDKKLVLDSVWATHGSILTMEDHYYEXXXXXXXXXATLGKPGITITCLMVGSIPKSRKLEE |
.L..FTIKP.DKKLVLDS...TH..IL.M.DHY.E............G.PGITIT.LMV...P.SRKL.E | |
Retrocopy | MLDSFTIKPRDKKLVLDSAPVTHD*ILAMKDHYHESAIGDIVAATLMGEPGITITLLMVSKVPRSRKLAE |
Parental | LLMIFLINKDAII |
LL....I.K.AII | |
Retrocopy | LLKTYGIDKGAII |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000003758 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000007253 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000000072 | 1 retrocopy | |
Dipodomys ordii | ENSDORG00000001392 | 1 retrocopy | |
Homo sapiens | ENSG00000163931 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000005312 | 3 retrocopies |
retro_meug_1397 , retro_meug_160, retro_meug_796,
|
Myotis lucifugus | ENSMLUG00000000943 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000014433 | 1 retrocopy | |
Mus musculus | ENSMUSG00000021957 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000015904 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000016911 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000009891 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000015024 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000016283 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000016064 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000017349 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000021408 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000012114 | 1 retrocopy | |
Takifugu rubripes | ENSTRUG00000003009 | 1 retrocopy |