RetrogeneDB ID: retro_meug_1454

Retrocopy location

• Organism: Wallaby (Macropus eugenii)
• Coordinates: Scaffold410:51133..51848(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMEUG00000003011
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: MC3R
• Ensembl ID: ENSMEUG00000009981
• Aliases: None
• Description: melanocortin 3 receptor [Source:HGNC Symbol;Acc:6931]

Sequence

>retro_meug_1454
AAGAGCAAGCCATCACCCTGTGAGCAAGTGAACATAGCTGTTGAGGTGTTCCTGACTCTTGGTATCATCAGCCTGTTGGA
GAACATTTTAGTCATCGGTGCCATAGTTAAGAACAAGAACTTGCACTCTCCCATGTATTTCTTTGTATGTAACTTAGCTG
TGGCAGACATGCTTGTGAGTGTGTCCAATGCCTGGGAGACCATCACAATATACTTAATAAACAATAAACATCTGGTGATA
GAAGATGCTTTTGTGCGCCATATAGACAATGTATTTGATTCTATGATCTGCATCTCTGTTATGGCCTCCATGTGCAGTTT
GTTGGCCATCGCCGTGGACAGGTATGTCACCATCTTCTATGCCCTGCGCTACCACAACATCATGACAGTGAAGCGATCAG
GGATCATCATTGTATGCATCTGGGTCTTTTGTACTAGTTGTGGCATCATCTTCATTCTTTACTATGAGTCTACTTATGTC
GTCATTTGTCTCATTACCATGTTTTTCACCATGCTATTCCTTATGGTATCTCTATATATCCATATGTTTCTCCTGGCTCG
GACTCATGTGAAGCAGATTGCAGCCTTGTCTGGCTATAGTTCAGTCCGGCAGAGGATCAGCATGAAGGGGCCATCACCCT
GACATGTTACTTGGTGTTTTTATTGTTTGCTGGGCTCCATTTTTCCTCCACCTCATCCTAATGATTTCTTGTCCC

Alignment

ORF - retro_meug_1454 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 61.83 %
• Parental protein coverage: 68.88 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  QSSPGFCEQVFIKSEIFLTLGIISLLENILVILAVLKNGNLHSPMYFFLCSLAVAHMLVSVSXXXXXXXX
          .S.P..CEQV.I..E.FLTLGIISLLENILVI.A..KN.NLHSPMYFF.C.LAVA.MLVSVS........
Retrocopy KSKPSPCEQVNIAVEVFLTLGIISLLENILVIGAIVKNKNLHSPMYFFVCNLAVADMLVSVSNAWETITI

Parental  XXXXXXXXXFDDQLIQYMDNVFDSMICISLVASICNLLVIAIDRYITIFYALRYHSIMTVKKAITLIGAI
          ...........D......DNVFDSMICIS..AS.C.LL.IA.DRY.TIFYALRYH.IMTVK.....I..I
Retrocopy YLINNKHLVIEDAFVRHIDNVFDSMICISVMASMCSLLAIAVDRYVTIFYALRYHNIMTVKRSGIIIVCI

Parental  WVCCFICGIMFIIYSESKTVIVCLVTMFFAMLLLMATLYMHMFLFARLHVKRIAALPADGVMHQHTCMK-
          WV.C..CGI.FI.Y.ES..V..CL.TMFF.ML.LM..LY.HMFL.AR.HVK.IAAL.......Q...MK.
Retrocopy WVFCTSCGIIFILYYESTYVVICLITMFFTMLFLMVSLYIHMFLLARTHVKQIAALSGYSSVRQRISMK<

Parental  GAVTIT-ILLGVFIFCWAPFFLHLILIITCP
          GA.T.T..LLGVFI.CWAPFFLHLIL.I.CP
Retrocopy GAITLT<MLLGVFIVCWAPFFLHLILMISCP

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Macropus eugenii was not studied using RNA-Seq expression data.

ChIP-Seq

Macropus eugenii was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_meug_1454 retrocopy.

TSS

Macropus eugenii was not studied using FANTOM5 data.

Lab

retro_meug_1454 was not experimentally validated.

Homology

Retrocopy orthology:

Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Macropus eugenii	ENSMEUG00000009981	1 retrocopy	retro_meug_1454 ,