RetrogeneDB ID: | retro_meug_1459 | ||
Retrocopylocation | Organism: | Wallaby (Macropus eugenii) | |
Coordinates: | Scaffold41293:15744..16223(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | UBE2J2 | ||
Ensembl ID: | ENSMEUG00000006403 | ||
Aliases: | None | ||
Description: | ubiquitin-conjugating enzyme E2, J2 [Source:HGNC Symbol;Acc:19268] |
Percent Identity: | 79.14 % |
Parental protein coverage: | 59.56 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | GYYHGKLIFPREFPFKPPSIYMITPNGRFKCNTRLCLSITDFHPDTWNPAWSVSTILTGLLSFMVEKGPT |
GYYHGKLIFPREFPFKPPSI..ITPNGRFKCNTRLCLSITDF..DTWNPAWSVS.ILT....FMV.KGP. | |
Retrocopy | GYYHGKLIFPREFPFKPPSIFRITPNGRFKCNTRLCLSITDFQSDTWNPAWSVS-ILTCVQNFMVAKGPR |
Parental | LGSIETSDYTKRQLAAQSLAFNLKDKVFCELFPEVVEEIKQKQKAQDELSSRPQP-LPLPDVVPDGDTHH |
LGSIETS.YTK.QLAAQSLAFNLKD.VFCELFP.VVEEIKQK..........P.P.LPLPD.VP.G.THH | |
Retrocopy | LGSIETSYYTKNQLAAQSLAFNLKDQVFCELFP*VVEEIKQK*HKMKSVAA-PSP<LPLPDAVPHGKTHH |
Parental | GQNGLQLLNGHVPMAGPNHAGLQ |
..N.LQLLNGHVPMAGPN.AGLQ | |
Retrocopy | DRNRLQLLNGHVPMAGPNPAGLQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Macropus eugenii | ENSMEUG00000006403 | 1 retrocopy |
retro_meug_1459 ,
|
Mus musculus | ENSMUSG00000023286 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000002927 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000019749 | 1 retrocopy |