>retro_meug_1490
AATTGTTCTGCCATGCACACACGCCAGGCACTCTGCTGCAAGATGTCTGTGGAGTACGACAAGTTCATCGCGTCAGAAAG
GAAAAGGCTCTGCCATGTGGATGGTAATAATTATGTGAACTCAAAAGGGCTCTTGCAGTTACTCTCTGGTTTCTCCCCAA
GTCAGGATGTCTACGTGGGGGAACCTAGTCTGGACCACTCTCTTGAGGCAGCTGACCGAGCCCAGGGACGTGGAACTGCA
TCTACAGTCAAATTCTGGTTTGCTACAGGAGGAGCTGGGTTCTGCATCAGCAGAGGTCTTGCCTTCAGAATGAGTCCTTG
GGTCAGCCTGGGCAACTTCATCAGCACTGCTGAGAAAGCCAGACTTCCTGATGACTGCACCATTGGTATATCACTGAAGC
ACTGCTGCAAGTGAAACTATTGCATAGTTTCCACTCT
ORF - retro_meug_1490 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
86.58 % |
Parental protein coverage: |
79.14 % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
1 |
Retrocopy - Parental Gene Alignment:
Parental | NCSAMHTRQALCCKMSVEYDKFIESGRKWFCHVDDDNYVNSKGLLQLLSGFSPSQDVYVGRPSLDHPIEA |
| NCSAMHTRQALCCKMSVEYDKFI.S.RK..CHVD..NYVNSKGLLQLLSGFSPSQDVYVG.PSLDH..EA |
Retrocopy | NCSAMHTRQALCCKMSVEYDKFIASERKRLCHVDGNNYVNSKGLLQLLSGFSPSQDVYVGEPSLDHSLEA |
|
Parental | ADRGQGSGTASTVKFWFATGGAGFCISRGLALKMSPWASLGNFISTAEKVRLPDDCTIG-YIIEGLLQVK |
| ADR.QG.GTASTVKFWFATGGAGFCISRGLA..MSPW.SLGNFISTAEK.RLPDDCTIG.YI.E.LLQVK |
Retrocopy | ADRAQGRGTASTVKFWFATGGAGFCISRGLAFRMSPWVSLGNFISTAEKARLPDDCTIG<YITEALLQVK |
|
Parental | LLHSTLFHS |
| LLHS..FHS |
Retrocopy | LLHS--FHS |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Macropus eugenii was not studied using RNA-Seq expression data.
Macropus eugenii was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_meug_1490 retrocopy.
Macropus eugenii was not studied using FANTOM5 data.
retro_meug_1490 was not experimentally validated.
Retrocopy orthology:
Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
1 parental gene, and
1 retrocopy.