>retro_meug_1493
TATTACATGACCCTGGAAGCTTTTCACATGATGCCAGTGAATGCCAAAGTCACGTACCCACAGTTAATGCAAGGCTTCTT
ACCATTATGGAACTTGTTTACTTATATGGAACCTTTTCTTCACATTTGCCAGGTGAACAATTTCAAGTTTGCTGATATTC
TGTACCCAAAAGGAAAACATACATGTCAATTTTTAAGTGCCATCATCAACTTCATTCACTTCAGAGAATCACATGGAGAA
ACATACATGAAATATGTACAGGAACATAAATCCTCCGTGGACAAGATGCAGCAGCTGCAAGTAGCACAACAGGAGGCATT
GATGAAACAGGAGCAGCTTAACTCTGTCCCACTTGAAGAGCAAGCTGAATTCAAGCAACTCTTAGAGGACATCCACAAGC
TACAGCAAACACTGAATGGATTTCATCAAAAAACAGTAGCAATACAAGAAGGAATTTCCCAGAAGAAGCTGGACATTTCT
AAGACCACTAAAAGTCTGAATGAATTAAAATTGTCACTATTTACTTTGAAAGAAGAACAGGAGATTTTGAAAACAAAAAT
TGTGGACTCTCCAGGGAAATTAAAGAATGACATTGAGAAAATGAAAGAGATAGGGCAGAAACTCAAAACTGCAAAGCTCG
AAGTGACTGAGAAACATGAAGCCTATCGAGAGGCAATTGAGGTTATGCCTTCATTCCAG
ORF - retro_meug_1493 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
80.26 % |
Parental protein coverage: |
50.11 % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | YGIPLDAFHMMPVNAEVMYPQLMEGFLPLCNLFTYMEYFLLICQVNDFEFADILYPKGKRTCRFLSAIIN |
| Y...L.AFHMMPVNA.V.YPQLM.GFLPL.NLFTYME.FL.ICQVN.F.FADILYPKGK.TC.FLSAIIN |
Retrocopy | YYMTLEAFHMMPVNAKVTYPQLMQGFLPLWNLFTYMEPFLHICQVNNFKFADILYPKGKHTCQFLSAIIN |
|
Parental | FIHFRESRRETYMKYLQEHKSSMDKMQQLQVAQQEALMKLEQLDSVPVEEQAECKQLLEDIHELQQTLNG |
| FIHFRES..ETYMKY.QEHKSS.DKMQQLQVAQQEALMK.EQL.SVP.EEQAE.KQLLEDIH.LQQTLNG |
Retrocopy | FIHFRESHGETYMKYVQEHKSSVDKMQQLQVAQQEALMKQEQLNSVPLEEQAEFKQLLEDIHKLQQTLNG |
|
Parental | FHQKTV---DKISQKKLYLSKATKYLNE-KWSLVTLKEKQEILKIKIADSPEKLKNDIEKMKEILQKLIS |
| FHQKTV.....ISQKKL..SK.TK.LNE.K.SL.TLKE.QEILK.KI.DSP.KLKNDIEKMKEI.QKL.. |
Retrocopy | FHQKTVAIQEGISQKKLDISKTTKSLNELKLSLFTLKEEQEILKTKIVDSPGKLKNDIEKMKEIGQKLKT |
|
Parental | AKLEVTEKYETYRDAIEGMPSFQ |
| AKLEVTEK.E.YR.AIE.MPSFQ |
Retrocopy | AKLEVTEKHEAYREAIEVMPSFQ |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Macropus eugenii was not studied using RNA-Seq expression data.
Macropus eugenii was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_meug_1493 retrocopy.
Macropus eugenii was not studied using FANTOM5 data.
retro_meug_1493 was not experimentally validated.
Retrocopy orthology:
Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
3 parental genes, and
3 retrocopies.