RetrogeneDB ID: | retro_meug_1548 | ||
Retrocopylocation | Organism: | Wallaby (Macropus eugenii) | |
Coordinates: | Scaffold44852:14748..15173(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TRAPPC3 | ||
Ensembl ID: | ENSMEUG00000013169 | ||
Aliases: | None | ||
Description: | trafficking protein particle complex 3 [Source:HGNC Symbol;Acc:19942] |
Percent Identity: | 64.43 % |
Parental protein coverage: | 82.22 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | ALVTQLCKDYENDEDVNKQLDKMGYNIGVRLIEDFLARSNVGRCHDFRETADVIAKVAFKMYLGITPSIT |
ALVTQLCKDYENDED.NKQLDK....IGV.LI.D.LA.S.VGRC.D..E..D.IA...FKMYLG....I. | |
Retrocopy | ALVTQLCKDYENDEDMNKQLDKIISDIGV*LIKDLLAWSKVGRCPDL-ENSDFIATTTFKMYLG----IA |
Parental | NWSPAGDEFSLILENNPLVDFVELPDNHSSLIYSNLLCGVLRGALEMVQMAVDVKFVQDTLKG-DGVTEI |
.WS.A.D.FSL.LENNP.VDFVELP.NHS..IYS....G...G...M.Q.AV.VKF.QD.L...DGVTEI | |
Retrocopy | IWSLASDKFSLMLENNPMVDFVELPENHSFFIYSSFEWGA-EGSPAMGQRAVGVKFAQDMLNE<DGVTEI |
Parental | RMRFIKRIE |
RMR.IK.IE | |
Retrocopy | RMRLIKWIE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Dasypus novemcinctus | ENSDNOG00000019015 | 2 retrocopies | |
Macropus eugenii | ENSMEUG00000013169 | 1 retrocopy |
retro_meug_1548 ,
|
Myotis lucifugus | ENSMLUG00000002140 | 1 retrocopy |