>retro_meug_1661
CATGATTCTCTCAATCGATACTACCACAGCCACCCACTTTGGGAGAGGGCATGGAAACTTTCACAGGCCATTCTTGTCGT
CAGATTTGAGATGCTCTGTAGCATCTGGTGTGATGGCTGTAAGAATCACATTGGCATGGGCATTTGTTACAATGCTGAAA
AAAAGGTTGGCAATTATTACACAACCCCAATCTACAGGTTCAGAATGAAATGTCACCTCTGTGTCAACTGCATCGAGATG
CAGAGGGATCCTGTCAGTTGTGACTATGTGATTATGAGTGGTGCCCAGAGGAAAGAGGAGCGCTAGGACATGGCAGACAA
TAAACAGATCTTGACCACAGAGCAGGAGAAGAAGCAGAAGCTGGAGATGGATGCTATGTTCAACCTGGAGCATGGCACCA
CAGACCAGAGCAAGTTGCAGAAGGCCATTCCCACCCTGTCCAACATCCAGGAAGCCCAGAGAGCCTGGAAGGATGACTTT
GCCCTTAACAGCATGCTAAGGAGGAAGTTTAGGAAAAAGGAAAAGGCCATAAAAGAAGAGGAGGGAAAAACACTGGCCCT
ACAGAACAAGGCAAACCTCAGGATCACCCTGGTTCCTGAAACAGAAGAGAACTGGAAGCTTGCTGCCCTGCTTAAGTACC
ACATCCTGGACTCATATGAAGAC
ORF - retro_meug_1661 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
85.14 % |
Parental protein coverage: |
67.89 % |
Number of stop codons detected: |
1 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | HGSLNRYHHSHPLRERAQKLSQGILVIRFEMPYNIWCDGCKNHIGMGVRYNAEKKKVGNYYTTPIYRFRM |
| H.SLNRY.HSHPL.ERA.KLSQ.ILV.RFEM...IWCDGCKNHIGMG..YNAE.KKVGNYYTTPIYRFRM |
Retrocopy | HDSLNRYYHSHPLWERAWKLSQAILVVRFEMLCSIWCDGCKNHIGMGICYNAE-KKVGNYYTTPIYRFRM |
|
Parental | KCHLCVNYIEMQTDPANCDYVIVSGAQRKEERWDMADNEQILTTEQEKKQKLETDAMFRLEHGTADQNKL |
| KCHLCVN.IEMQ.DP..CDYVI.SGAQRKEER.DMADN.QILTTEQEKKQKLE.DAMF.LEHGT.DQ.KL |
Retrocopy | KCHLCVNCIEMQRDPVSCDYVIMSGAQRKEER*DMADNKQILTTEQEKKQKLEMDAMFNLEHGTTDQSKL |
|
Parental | QKAIPTLSNIQEAQSAWKDDFALNSMLRRKFREKKKAIKEEEEKTLALQTKANLSIPLVPETEEDRKLAA |
| QKAIPTLSNIQEAQ.AWKDDFALNSMLRRKFR.K.KAIKEEE.KTLALQ.KANL.I.LVPETEE..KLAA |
Retrocopy | QKAIPTLSNIQEAQRAWKDDFALNSMLRRKFRKKEKAIKEEEGKTLALQNKANLRITLVPETEENWKLAA |
|
Parental | LLKYHSLDSYED |
| LLKYH.LDSYED |
Retrocopy | LLKYHILDSYED |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Macropus eugenii was not studied using RNA-Seq expression data.
Macropus eugenii was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_meug_1661 retrocopy.
Macropus eugenii was not studied using FANTOM5 data.
retro_meug_1661 was not experimentally validated.
Retrocopy orthology:
Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
1 parental gene, and
1 retrocopy.