RetrogeneDB ID: retro_meug_1665

Retrocopy location

• Organism: Wallaby (Macropus eugenii)
• Coordinates: Scaffold51878:13061..13616(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: HSD17B8
• Ensembl ID: ENSMEUG00000008660
• Aliases: None
• Description: hydroxysteroid (17-beta) dehydrogenase 8 [Source:HGNC Symbol;Acc:3554]

Sequence

>retro_meug_1665
ATGGTGGTCCAGCTTCAACCGCATTGAGCATTCGCTCTGGTCACAGGTGCAGGCAGTTGCCATCAGTTGGGCAGTCAGCC
TGCACCTGACCAGGGAAGGGGCTGCAAGTGACCAGGATGGGGCAGCTGCTGAGAAGATTGTACGACTTCTAGAGGGGATG
GGGAGTGAAGCTGGGGCTGGCTTAAGGTATTATGCTGCTTTCCAGGTTGATGTGACCAAAGCCAGGGCAATGCAGGGGCT
GATAGAGCAAATCCATGCCTGTTTCTCTCGTCTACCATCAATGGTGGTCTCTCATGCTAGGTTTACCCGAGATGAGTTTT
TGTTCTGAATACCTGAGGATTACTGGAATGAAGTCATTTCTGTCAATCTCAAGGGCACCTTTTTGGTCTCTCAGGCTACA
GTTAGACACCTGGTATCCAGTGACTATGGTGGCTCCATCATCAACATCAGCAGCATCATGTAAAGGTGGGGAACCTGGGA
CAGGCAAACTATGCAACATCCAGAGCTGGAGTGGAAGAAATAACCTGTAGTGTGTCCCAGGAACTTGGATGACAT

Alignment

ORF - retro_meug_1665 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 65.79 %
• Parental protein coverage: 72.48 %
• Number of stop codons detected: 3
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  MAAQLRLRSALALVTGAGS-GIGRAVSLRLAREGALVAASDRDGAAAEKTIRLLEGTESKLGLAGRH-AA
          M..QL....A.ALVTGAGS..I..AVSL.L.REG...AASD.DGAAAEK..RLLEG..S..G...R..AA
Retrocopy MVVQLQPH*AFALVTGAGS>AISWAVSLHLTREG---AASDQDGAAAEKIVRLLEGMGSEAGAGLRYYAA

Parental  FQADVAEAESVHGLIEQIQACFSRPPSVVVSCAGITQDEFLLRMPEDYWDEVIAVNLKGTFLVTQAAARA
          FQ.DV..A....GLIEQI.ACFSR.PS.VVS.A..T.DEFL...PEDYW.EVI.VNLKGTFLV.QA..R.
Retrocopy FQVDVTKARAMQGLIEQIHACFSRLPSMVVSHARFTRDEFLF*IPEDYWNEVISVNLKGTFLVSQATVRH

Parental  LVSSGCGGSIINIGSIV-GKVGNLGQANYAASKAGVEGMTRSVARELGRH
          LVSS..GGSIINI.SI...KVGNLGQANYA.S.AGVE..T.SV..ELG.H
Retrocopy LVSSDYGGSIINISSIM<VKVGNLGQANYATSRAGVEEITCSVSQELG*H

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Macropus eugenii was not studied using RNA-Seq expression data.

ChIP-Seq

Macropus eugenii was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_meug_1665 retrocopy.

TSS

Macropus eugenii was not studied using FANTOM5 data.

Lab

retro_meug_1665 was not experimentally validated.

Homology

Retrocopy orthology:

Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Macropus eugenii	ENSMEUG00000008565	1 retrocopy	retro_meug_2184,
Macropus eugenii	ENSMEUG00000008660	1 retrocopy	retro_meug_1665 ,